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WenjieDu
pygrinder

PyGrinder: a Python toolkit for grinding data beans into the incomplete for real-world data simulation by introducing missing values with different missingness patterns, including MCAR (complete at random), MAR (at random), MNAR (not at random), sub sequence missing, and block missing

122K 65 6
lmdu
pyfastx

a python package for fast random access to sequences from plain and gzipped FASTA/Q files

88K 294 24
m-matelski
mdiff

Package for finding difference between two input sequences with ability to detect sequence elements displacements.

11K 32 0
Liang-Team
sequenzo

A fast, scalable, and intuitive Python package in sequence analysis.

10K 34 10
OmenApps
django-generate-series

Use Postgres' generate_series to create sequences with Django's ORM

5K 33 3
biolab
orange3-timeseries

🍊 :chart_with_upwards_trend: Orange add-on for analyzing, visualizing, manipulating, and forecasting time series data.

4K 66 41
PythonSJL
pypynum

PyPyNum is a versatile Python math lib. It features modules for math, data analysis, arrays, crypto, physics, RNG, data proc, stats, eq solving, image proc, interp, matrix calc, and high-prec math. Designed for scientific computing, data science, and ML, it offers efficient, general-purpose tools.

3K 32 1
modernatx
seqlike

Unified biological sequence manipulation in Python

3K 208 21
akikuno
cstag

Python module to manipulate and visualize minimap2's cs tag

1K 11 0
scala-tessella
ring-seq-py

A Pythonic class for sequences considered circular

1K 0 0
PythonSJL
numpypy

PyPyNum is a versatile Python math lib. It features modules for math, data analysis, arrays, crypto, physics, RNG, data proc, stats, eq solving, image proc, interp, matrix calc, and high-prec math. Designed for scientific computing, data science, and ML, it offers efficient, general-purpose tools.

1K 32 1
maxdoblas
quicked

QuickEd is a high-performance exact sequence alignment based on the bound-and-align paradigm.

911 29 2
bioconvert
bioconvert

Bioconvert is a collaborative project to facilitate the interconversion of life science data from one format to another.

834 391 45
biolab
bluewhale3-timeseries

🍊 :chart_with_upwards_trend: Orange add-on for analyzing, visualizing, manipulating, and forecasting time series data.

768 66 41
mutalyzer
mutalyzer-algebra

A Boolean Algebra for Genetic Variants

634 13 2
scbirlab
streq

🧬 Python utilities for working with nucleotide sequence strings.

609 0 0
incertae-sedis
smof

Explore and analyze biological sequence data

585 17 3
WithPrecedent
camina

Flexible, lightweight, extensible, easy-to-use data structures for Python

448 0 0
hansalemaos
a-pandas-ex-sequence-search

Sequence / string search with NumPy in pandas DataFrames

392 0 0
virologycharite
sars2seq

A Python library and command-line scripts for working with SARS-CoV-2 sequences

384 2 0
hansalemaos
npsearchsequence

Sequence / string search with NumPy

330 0 0
NASA-AMMOS
seq-json-schema

Standardized JSON Schema for authoring multi-mission sequences.

297 9 2
Xaival
secuenciaalfanumerica

Librería de python para convertir de número a un grupo secuencial distinto AA, AB, ...

286 0 0
rkmlab
perf-ssr

PERF is an exhaustive repeat finder

273 33 11
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