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biotite-dev
biotite

A comprehensive library for computational molecular biology

4.7M 944 136
althonos
pyhmmer

Cython bindings and Python interface to HMMER3.

3.2M 162 17
althonos
lightmotif

A lightweight platform-accelerated library for biological motif scanning using position weight matrices.

10K 62 2
Liang-Team
sequenzo

A fast, scalable, and intuitive Python package in sequence analysis.

10K 34 10
TimoLassmann
kalign-python

A fast multiple sequence alignment program.

9K 155 34
moshi4
pymsaviz

MSA(Multiple Sequence Alignment) visualization python package for sequence analysis

8K 191 23
abimael10
anomaly-grid-py

Python bindings of a Rust library for anomaly detection in finite alphabets using variable-order Markov chains.

8K 1 0
althonos
peptides

Physicochemical properties, indices and descriptors for amino-acid sequences.

7K 117 19
ylab-hi
pxblat

PxBLAT: An Efficient and Ergonomic Python Binding Library for BLAT

3K 18 0
althonos
pymemesuite

Cython bindings and Python interface to the MEME suite, a collection of tools for the analysis of sequence motifs.

3K 17 0
ggonnella
gfapy

Library for handling data in the GFA1 and GFA2 formats

2K 71 8
yuanx749
py-cdhit

A Python package for CD-HIT, clustering protein or nucleotide sequences.

1K 118 0
akikuno
midsv

a Python module to translate SAM into MIDSV format.

1K 2 0
Edinburgh-Genome-Foundry
geneblocks

Library to compare DNA sequences (diff, common blocks, etc.)

852 44 3
nmdp-bioinformatics
seqann

Python package for doing fast and accurate sequence annotation

810 5 8
omatheuspimenta
gramep

GRAMEP - Genome vaRiation Analysis from the Maximum Entropy Principle

804 7 2
althonos
pyncbitk

Cython bindings and Python interface to the NCBI C++ ToolKit (including BLAST+).

730 11 0
nsbuitrago
vfind

Simple variant finding from NGS data

644 2 2
althonos
pyncbitk-runtime

Cython bindings and Python interface to the NCBI C++ ToolKit (including BLAST+).

617 11 0
incertae-sedis
smof

Explore and analyze biological sequence data

585 17 3
meyer-lab-cshl
codepub

Algorithms for sequence construction

509 0 0
xapple
seqsearch

Sequence similarity searches (e.g. BLAST) made easy

410 3 1
weekend37
string-kernels

Polynomial String Kernel and linear time String Kernel. Supports multithreading and is compatible with Scikit-Learn SVMs.

389 5 1
Superzchen
ilearnplus

iLearnPlus is the first machine-learning platform with both graphical- and web-based user interface that enables the construction of automated machine-learning pipelines for computational analysis and predictions using nucleic acid and protein sequences.

314 125 36
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