Search Packages

pysqa

Simple HPC queuing system adapter for Python on based jinja templates to automate the submission script creation.

longbow

Longbow is a tool for automating simulations on a remote HPC machine. Longbow is designed to mimic the normal way an application is run locally but allows simulations to be sent to powerful machines.

runjob

runjob is a program for managing a group of related jobs running on a compute cluster

mycluster

"Utilities to support interacting with multiple HPC clusters"

htseqcountcluster

A cli for running multiple qsub jobs with HTSeq's htseq-count on a cluster.

qstat

parse Grid Engine qstat job info list into a list of python dicts

libbatch

Generic batch management library

orthoevol

An easy to use and comprehensive python package which aids in the analysis and visualization of orthologous genes. 🐵

datasnakes

An easy to use and comprehensive python package which aids in the analysis and visualization of orthologous genes. 🐵

qtop

qtop (pronounced queue-top) is a tool written in order to monitor the state of Queueing Systems, along with related information relevant on HPC & grid clusters. At present it supports **PBS, SGE & OAR** families. There is a historic reference for the prior shell version of the tool, at former CERN source:

qsubwt

Simple wrapper for qsub which provides the functionality of the '-sync' option

scisweeper

scisweeper - scientific parameter sweeper, with easy debugging capabilities and an interface for most scientific queuing systems.