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prism-oncology
scyan

Biology-driven deep generative model for cell-type annotation in cytometry. Scyan is an interpretable model that also corrects batch-effect and can be used for debarcoding or population discovery.

4K 43 2
PixelgenTechnologies
pixelgen-pixelator

A command-line tool and library to process and analyze sequencing data from Molecular Pixelation (MPX) and Proximity Network (PNA) assays.

2K 20 4
Ashford-A
univi

UniVI is a scalable multi-modal VAE toolkit for aligning heterogeneous single-cell datasets into a shared latent space—supporting unimodal, dual-modal, and tri-modal (and beyond) integration. It can additionally be used for cross-modal imputation, data generation of biologically-relevant synthetic samples, data denoising, and structured evaluation.

1K 5 0
gao-lab
cell-decipher

DECIPHER for learning high-fidelity disentangled embeddings from spatial omics data

356 24 1
deepomicslab
scoit

SCOIT is an implementation of a probabilistic tensor decomposition framework for single-cell multi-omics data integration.

245 5 2
RabadanLab
randomly

A Library for Denoising Single-Cell Data with Random Matrix Theory

142 38 10
caokai1073
pamona

The software of Pamona, a partial manifold alignment algorithm.

106 22 3
rahulbhadani
scomix

Python package for analysis of data from single-cell data-science.

37 0 0
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