Singularity Python Packages

spython

streamlined singularity python client (spython) for singularity

2.5M 65 31

hpccm

HPC Container Maker

17K 512 101

scitex-container

Unified container management for Apptainer and Docker — part of the SciTeX ecosystem

7K 0 0

plip

Protein-Ligand Interaction Profiler - Analyze and visualize non-covalent protein-ligand interactions in PDB files according to 📝 Schake, Bolz, et al. (2025), https://doi.org/10.1093/nar/gkaf361

4K 676 141

composite-resolve

Evaluate Python functions at points where they're undefined.

4K 6 0

expfactory

software to generate a reproducible container battery of experiments.

3K 39 15

singularity-hpc

Local filesystem registry for containers (intended for HPC) using Lmod or Environment Modules. Works for users and admins.

2K 130 29

clowdr

Command-line utility for iteratively developing pipelines, deploying them at scale, and sharing data and derivatives

1K 10 3

pycompss

COMP Superscalar (COMPSs) is a framework which aims to ease the development and execution of applications for distributed infrastructures, such as Clusters, Grids and Clouds.

1K 64 24

popper

Container-native task automation engine.

601 308 62

brainseg-containers

wrapper for brain segmentation tools

590 0 0

singularity-compose

orchestration for singularity containers (under development)

543 77 18

lxm3

LXM3: XManager launch backend for HPC clusters

387 10 1

jh-hpc-interface

JupyterHub + High-Performace Computing

310 6 1

connectomemapper

Connectome Mapper 3 is a BIDS App that implements full anatomical, diffusion, resting/state functional MRI, and recently EEG processing pipelines, from raw T1 / DWI / BOLD , and preprocessed EEG data to multi-resolution brain parcellation with corresponding connection matrices.

280 83 31