Snakemake Python Packages

snakemake

This is the development home of the workflow management system Snakemake. For general information, see

254K 3K 639

pytest-workflow

Configure workflow/pipeline tests using yaml files.

57K 69 10

snakefmt

The uncompromising Snakemake code formatter

28K 189 31

tibanna

Tibanna helps you run your genomic pipelines on Amazon cloud (AWS). It is used by the 4DN DCIC (4D Nucleome Data Coordination and Integration Center) to process data. Tibanna supports CWL/WDL (w/ docker), Snakemake (w/ conda) and custom Docker/shell command.

13K 72 28

sequana

Sequana: a set of Snakemake NGS pipelines

6K 151 27

snakebids

Snakemake + BIDS

2K 22 16

sequana-fastqc

sequana pipeline to perform parallel fastqc and summarize results with multiqc plot

2K 5 3

monsda

MONSDA, Modular Organizer of Nextflow and Snakemake driven hts Data Analysis

1K 12 3

moduleultra

A control center for complex bioinformatics pipelines

1K 1 1

snakevision

A tool to visualize Snakemake workflows.

833 32 1

snakedeploy

deploy a snakemake pipeline directly from version control (under development)

802 25 13

solida

SOLIDA is command-line solution that facilitate the reproducibility and portability of NGS pipelines. It can easily organize the deployment, the data management and the execution of a Snakemake based workflow.

722 6 1