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prism-oncology
sopa

Technology-invariant pipeline for spatial omics analysis that scales to millions of cells (Xenium / Visium HD / MERSCOPE / CosMx / PhenoCycler / MACSima / etc)

6K 275 49
M4i-Imaging-Mass-Spectrometry
thyra

A modern Python library for converting Mass Spectrometry Imaging (MSI) data into standardized SpatialData/Zarr format, enabling seamless integration with spatial omics analysis workflows.

1K 21 1
saeyslab
harpy-analysis

Single-cell spatial omics analysis that makes you happy!

1K 61 7
iamtekson
geotile

Package for working with geographic raster tiles

1K 92 12
metaspace2020
metaspace-converter

Download and Convert METASPACE datasets to common formats such as AnnData or SpatialData

310 16 1
quentinblampey
spatialdata-xenium-explorer

Interoperability between SpatialData and the Xenium Explorer

266 26 0
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