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spikeinterface

A Python-based module for creating flexible and robust spike sorting pipelines.

kilosort

Fast spike sorting with drift correction

sortingview

Web app for viewing results of ephys spike sorting

spikeextractors

Python-based module for extracting from, converting between, and interfacing with many common file formats in extracellular recording.

isosplit6

Isosplit clustering

spikeinterface-gui

GUI for spikeinterface objects

mountainsort5

MountainSort 5 spike sorting algorithm

zpe-neuro

ZPE-Neuro V0.0: DETERMINISTIC NEURAL SIGNAL CODEC: Extracellular Spikes | Neuropixels | DANDI-Anchored | IBL Validated | Spike Train Transport

neurocomputers

NeuroBridge API — 123 endpoints, 55+ analysis modules for brain organoid data. Organoid IQ, STDP, attractors, consciousness metrics, and more.

spikesorters

Python-based module with spike sorter wrappers and a simple API for running them.

ml-ms4alg

MountainSort v4

catsort

A collision-aware with template matching spike sorter

isosplit5

Efficient clustering algorithm for unknown number of unimodal clusters

herdingspikes

Software for high density electrophysiology

hs-detection

Optimized spike detection based on https://github.com/mhhennig/HS2

spikely

Spike sorting made simple

yass-algorithm

YASS: Yet Another Spike Sorter

shybrid

A graphical tool for generating hybrid ground-truth spiking data for evaluating spike sorting performance

synapticonn

Inferring monosynaptic connections in neural circuits.

spike-cluster-score

Spike Cluster Score (SCS) is a clustering performance metric designed with the purpose of spike sorting in mind