Search Packages

big-fish

Toolbox for the analysis of smFISH images.

fishfeats

Napari plugin for spatial RNA quantification

deepcell-spots

Deep learning for fluorescent spot detection

deepblink

Threshold independent detection and localization of diffraction-limited spots.

fluospotter

Fluospotter is an end-to-end pipeline designed for nuclei segmentation and puncta detection in fluorescence microscopy images.

big-fish-reloaded

Toolbox for the analysis of smFISH images.