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Edinburgh-Genome-Foundry
dnachisel

:pencil2: A versatile DNA sequence optimizer

54K 269 51
Edinburgh-Genome-Foundry
dna-features-viewer

:eye: Python library to plot DNA sequence features (e.g. from Genbank files)

35K 689 105
Edinburgh-Genome-Foundry
snapgene-reader

👓 Python library to parse Snapgene *.dna files to dict or biopython seqrecord.

20K 31 8
Edinburgh-Genome-Foundry
sequenticon

:space_invader: Generate identicons for DNA sequences with Python

6K 38 5
adibvafa
codontransformer

CodonTransformer (2M+ Downloads); The tool for codon optimization, optimizing DNA for protein expression

4K 206 31
barricklab
ostir

Software for predicting translation initiation rates in bacteria

2K 33 9
Edinburgh-Genome-Foundry
dnacauldron

Cloning simulation for DNA assembly (Golden Gate, Gibson...)

2K 66 10
Merck
deepbgc

BGC Detection and Classification Using Deep Learning

2K 158 29
BjornFJohansson
ypkpathway

Automatic pathway assembly with the YeastPathwayKit

901 2 1
georgeoshardo
symbac

Accurate segmentation of bacterial microscope images using deep learning synthetically generated image data.

858 22 11
Edinburgh-Genome-Foundry
geneblocks

Library to compare DNA sequences (diff, common blocks, etc.)

852 44 3
hiyama341
teemi

A Python package for constructing microbial strains

724 44 3
jvrana
dasi

A Python molecular biology CAD tool with a dead-simple user interface

649 13 1
koeng101
dnadesign

A lua package for designing DNA.

572 38 1
Edinburgh-Genome-Foundry
bandwagon

🎺 Plot DNA digestion band patterns with Python

542 20 3
Edinburgh-Genome-Foundry
plateo

🤖 Python biolab automation library: parsers, report generators, picklist simulators, and more

495 46 8
Edinburgh-Genome-Foundry
genedom

Genetic part standardization

483 16 1
Edinburgh-Genome-Foundry
dna-features-viewer-lite

:eye: Python library to plot DNA sequence features (e.g. from Genbank files)

451 689 105
Edinburgh-Genome-Foundry
dnaweaver

A route planner for DNA assembly

444 37 9
Edinburgh-Genome-Foundry
tatapov

Tools for DNA overhang misannealing data.

441 13 1
Edinburgh-Genome-Foundry
bandwitch

💫 Computer-aided DNA assembly validation and identification from restriction digests.

434 15 0
brsynth
retropath2-wrapper

'python wrapper to run retropath2.0 knime workflow'

396 9 1
Edinburgh-Genome-Foundry
goldenhinges

DNA overhang design for Golden Gate etc.

322 15 0
Edinburgh-Genome-Foundry
primavera

:cherry_blossom: Python library for primer-based verification of DNA assemblies: primer selection, data analyis, etc.

315 32 4
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