Search Packages

sourmash

Quickly search, compare, and analyze genomic and metagenomic data sets.

microview

A reporting tool for aggregating results from taxonomic classification analyses

paroxython

Tag and recommend Python exercises based on algorithmic features

crest4

The `crest4` python package can automatically assign taxonomic names to DNA sequences obtained from environmental sequencing.

kraken-biom

Create BIOM-format tables (http://biom-format.org) from Kraken output (http://ccb.jhu.edu/software/kraken/, https://github.com/DerrickWood/kraken).

vclust

Fast and accurate tool for calculating Average Nucleotide Identity (ANI) and clustering virus genomes and metagenomes

gtnet

The Genome Taxonomy Network for assigning microbial taxonomy to DNA sequences

xlassify

An alignment-free deep-learning model trained to classify human gut bacteria

icb

This library provides a way to parse, manipulate and analyze ICB and GICS Codes.

clark-biom

Create BIOM-format tables (http://biom-format.org) from CLARK output (http://clark.cs.ucr.edu/) for use with downstream tools such as UniFrac, iTol (itol.embl.de), or PhyloToAST (phylotoast.org), PhyloToAST (http://phylotoast.org).

flextaxd

FlexTaxD (Flexible Taxonomy Databases) - Create, add, merge different taxonomy sources (QIIME, GTDB, NCBI and more) and create metagenomic databases (kraken2, ganon and more )

taxamatcher

Easy to use taxonomy correlator