Search Packages

pyscenic

pySCENIC is a lightning-fast python implementation of the SCENIC pipeline (Single-Cell rEgulatory Network Inference and Clustering) which enables biologists to infer transcription factors, gene regulatory networks and cell types from single-cell RNA-seq data.

pyjaspar

pyJASPAR: A Pythonic interface to JASPAR transcription factor motifs

tf-bind-transformer

Transformer for Transcription Factor Binding

scregulate

Python Toolkit for Transcription Factor Activity Inference and Clustering of scRNA-seq Data

moca

:m: Tool for motif conservation analysis

netzoopy

netZooPy is a network biology package implemented in Python.

netzoopy-sponge

Python package to generate prior gene regulatory networks.

mamotif

An integrative toolkit for detecting cell type-specific regulators

motifscan

A package for motif discovery and motif enrichment analysis

pyscorpion

Single Cell Oriented Reconstruction of PANDA-based Individually Optimized Networks

transfacpred

A method to predict the transcription factors using protein sequences.