Utrecht University Python Packages

recordlinkage

A powerful and modular toolkit for record linkage and duplicate detection in Python

4.6M 1K 153

pdb-tools

A dependency-free cross-platform swiss army knife for PDB files.

28K 451 121

asreview

Active learning for systematic reviews

18K 884 163

powerfit-em

Rigid body fitting of high-resolution structures in low-resolution cryo-electron microscopy density maps

6K 22 10

haddock3

Official repo of the modular BioExcel version of HADDOCK

1K 237 58

asreview-makita

Workflow generator for simulation studies using the command line interface of ASReview LAB

1K 44 19

asreview-dory

Official extension for ASReview LAB enabling state-of-the-art NLP models with dense embeddings and deep learning architectures. Ideal for systematic reviews where lightweight models fall short.

1K 11 4

asreview-insights

Tools such as plots and metrics to analyze (simulated) reviews for ASReview LAB

1K 40 13

ricgraph

Ricgraph - Research in context graph

893 30 6

asreview-datatools

Tool to preprocess datasets for ASReview

793 36 16

asreview-covid19

Extension that adds Covid-19 related datasets to ASReview

744 30 7

asreview-wordcloud

ASReview extension to generate wordcloud from data files.

717 17 2

asreview-visualization

Tools such as plots and metrics to analyze (simulated) reviews for ASReview LAB

640 40 13

asreview-statistics

Tool to preprocess datasets for ASReview

596 36 16

ricgraph-explorer

Ricgraph - Research in context graph

563 30 6

asreview-hyperopt

Hyper parameter optimization extension for ASReview. EXPERIMENTAL

381 8 3

deeprank-gnn

Graph Network for protein-protein interface

357 122 32

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