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broadinstitute
tangram-sc

Spatial alignment of single cell transcriptomic data.

3K 362 64
cafferychen777
flashdeconv

Fast Linear Algebra for Scalable Hybrid Deconvolution of Spatial Transcriptomics

604 15 0
jfnavarro
stpipeline

ST Pipeline contains the tools and scripts needed to process and analyze the raw files generated with the Spatial Transcriptomics method in FASTQ format.

415 93 52
kenflab
llm-sc-curator

Data-centric marker distillation for zero-shot cell-type and spatial annotation with LLMs.

219 3 0
Viggyvenkat
oncoordinate

Oncoordinate is an interpretable deep learning framework for single-cell and spatial transcriptomic analysis of malignancy that learns malignant and malignancy-associated cell states across epithelial, stromal, and immune lineages while remaining tightly integrated with the scverse ecosystem.

88 1 0
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