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cgohlke
tifffile

Read and write TIFF files.

24.4M 655 163
TissueImageAnalytics
tiatoolbox

Computational Pathology Toolbox developed by TIA Centre, University of Warwick.

32K 526 109
aignostics
aignostics

🔬 Python SDK providing access to the Aignostics Platform. Includes Aignostics Launchpad (Desktop Application), Aignostics CLI (Command-Line Interface), example notebooks, and Aignostics Client Library.

15K 14 5
slideflow
slideflow

Powerful, open-source AI tools for digital pathology.

2K 360 64
nadeemlab
deepliif

Deep Learning Inferred Multiplex ImmunoFluorescence for IHC Image Quantification (https://deepliif.org) [Nature Machine Intelligence'22, CVPR'22, MICCAI'23, Histopathology'23, MICCAI'24]

2K 249 90
DIAGNijmegen
wholeslidedata

No description available

945 113 31
cytomine
cytomine-python-client

A web platform for collaborative analysis of very large bio-medical images

836 15 5
SBU-BMI
wsinfer

Run patch-based classification on pathology whole slide images.

582 86 14
tand826
wsiprocess

Whole Slide Image (WSI) Processing Library for Histopathological / Cytopathological Machine Learning Tasks

465 25 3
PingjunChen
pyslide

Digital Pathology Whole Slide Image Analysis Toolbox

424 53 8
herrmannlab
dicomslide

Python library for reading whole slide images in DICOM format

211 9 3
luisvalesilva
wsipre

Handling whole-slide images with region-level annotations.

206 10 5
WonderLandxD
sdpc-for-python

Python library for processing whole slide images (WSIs) in sdpc format

141 71 14
PingjunChen
tissueloc

Localize the tissue regions in whole slide pathology images.

128 45 12
jgamper
compay-syntax

:microscope: Syntax - the arrangement of whole-slide-images and their image tiles to create well-formed computational pathology pipelines.

128 55 1
SBU-BMI
wsinfer-mil

CLI tool to run specimen-level inference on whole slide images

102 7 1
WonderLandxD
sdpc-linux

a library for sdpcPY (linux version)

95 71 14
btcrabb
slideseg

A Python module that produces image patches and annotation masks from whole slide images for deep learning in digital pathology.

73 80 24
SBU-BMI
spinpath

Run specimen-level inference on whole slide images.

63 7 1
cgohlke
napari-tifffile

A napari plugin for reading files via tifffile

63 655 163
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