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picard-metrics-sqlite

store picard metrics in sqlite

merge-sqlite

merge arbitrary number of sqlite files

bam-readgroup-to-json

Extract a readgroup from a BAM, and write it as json

readgroup-json-db

read readgroup data as json and store in sqlitedb

fastqc-db

store FastQC data/summary in sqlitedb

highway

Python SDK for Highway Workflow Engine - build durable workflows with simple decorators

fastqc-sqlite

store FastQC data/summary in sqlitedb

taskcontrol

Control, Create, Run named workflows & tasks with before/after middlewares support, data persistence, orm, authentication, logging, multi-threading/processing, events, network sockets, webhooks, client-agent libraries, etc with plugins support [Actively Developed, Funding Invited] - pip3 install taskcontrol https://pypi.org/project/taskcontrol

samtools-metrics-sqlite

store samtools metrics in sqlite

fastqc-to-json

fastqc to json for bwa cwl