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cgohlke
tifffile

Read and write TIFF files.

24.4M 655 163
zarr-developers
zarr

An implementation of chunked, compressed, N-dimensional arrays for Python.

17.9M 2K 401
cgohlke
imagecodecs

Image transformation, compression, and decompression codecs.

1.2M 178 30
p2p-ld
numpydantic

Type annotations for specifying, validating, and serializing arrays with arbitrary backends in Pydantic (and beyond)

383K 140 5
ome
ome-zarr

Implementation of next-generation file format (NGFF) specifications for storing bioimaging data in the cloud.

326K 238 68
cgohlke
imagecodecs-numcodecs

Image transformation, compression, and decompression codecs.

30K 178 30
ome-zarr-models
ome-zarr-models

A minimal Python package for reading, writing and validating OME-Zarr (meta)data

25K 37 17
ecmwf
tensogram

A library for encoding and decoding binary scientific data with embedded semantic metadata in a network-transmissible binary message format.

17K 4 0
google
xarray-beam

Distributed Xarray with Apache Beam

6K 166 11
JaneliaSciComp
fileglancer

Browse, share, and publish OME-Zarr data

6K 25 4
TGSAI
multidimio

Cloud-native, scalable, and user-friendly multi dimensional energy data!

6K 39 17
pymmcore-plus
ome-writers

Unified API for streaming camera frames to either OME-TIFF or OME-Zarr format

5K 13 7
cubed-dev
cubed

Scalable array processing with bounded memory

5K 265 27
ome
napari-ome-zarr

A napari plugin for zarr backed OME-NGFF images

4K 50 26
ecmwf
tensogram-xarray

xarray backend engine for tensogram .tgm files

3K 4 0
ecmwf
tensogram-zarr

Zarr v3 store backend for tensogram .tgm files

3K 4 0
pangeo-forge
pangeo-forge-recipes

Python library for building Pangeo Forge recipes.

3K 134 53
OSOceanAcoustics
echopype

Enabling interoperability and scalability in ocean sonar data analysis

3K 132 90
Euro-BioImaging
eubi-bridge

A Python-based tool for parallelized conversion of image datasets from various formats to OME-Zarr, with support for distributed processing and multi-dimensional concatenation.

3K 27 1
khanlab
zarrnii

Package for working with OME-Zarr and NIFTI images in a unified manner, with a focus on spatial transformations

2K 10 4
janelia-cellmap
cellmap-data

Utility for loading CellMap data for machine learning training, utilizing PyTorch, TensorStore, Xarray, and PyDantic.

2K 7 3
ecmwf
tensogram-anemoi

anemoi-inference output plugin for tensogram .tgm files

2K 4 0
ome
omero-cli-zarr

Plugin for exporting images in zarr format.

2K 20 11
M4i-Imaging-Mass-Spectrometry
thyra

A modern Python library for converting Mass Spectrometry Imaging (MSI) data into standardized SpatialData/Zarr format, enabling seamless integration with spatial omics analysis workflows.

1K 21 1
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