Alignment Python Packages

pandas

Flexible and powerful data analysis / manipulation library for Python, providing labeled data structures similar to R data.frame objects, statistical functions, and much more

facexlib

FaceXlib aims at providing ready-to-use face-related functions based on current STOA open-source methods.

edit-distance

Python library for computing edit distance between arbitrary Python sequences.

dtwalign

Comprehensive dynamic time warping module for python

scikit-fda

Functional Data Analysis Python package

rmsd

Calculate Root-mean-square deviation (RMSD) of two molecules, using rotation, in xyz or pdb format

pafpy

A lightweight library for working with PAF (Pairwise mApping Format) files

thingsvision

Python package for extracting representations from state-of-the-art computer vision models

ffsubsync

Automagically synchronize subtitles with video.

astroalign

A tool to align astronomical images based on asterism matching

py-openjudge

OpenJudge: A Unified Framework for Holistic Evaluation and Quality Rewards

genomeworks-cuda-10-1

SDK for GPU accelerated genome assembly and analysis

genomeworks-cuda-10-0

NVIDIA genomics python libraries and utiliites

pyspoa

Python bindings to spoa

trajectopy

Trajectory Evaluation in Python

aeneas

aeneas is a Python/C library and a set of tools to automagically synchronize audio and text (aka forced alignment)

pypar

Phoneme alignment representation compatible with multiple forced aligners

genomeworks-cuda-10-2

SDK for GPU accelerated genome assembly and analysis

subaligner

Automatically synchronize and translate subtitles, or create new ones by transcribing, using pre-trained DNNs, Forced Alignments and Transformers. https://subaligner.readthedocs.io/

genomeworks-cuda-11-0

SDK for GPU accelerated genome assembly and analysis

genomeworks-cuda-11-1

NVIDIA genomics python libraries and utiliites

glassbox-mech-interp

Mechanistic interpretability + EU AI Act Annex IV compliance. 21/21 frameworks: ACDC edge-circuit discovery, multi-arch GQA/RMSNorm adapter (Llama-3/Mistral/Phi-3), cross-model comparison, causal scrubbing, DAS, Hessian bounds, BH FDR, folded LayerNorm, SAE polysemanticity, multi-corruption, held-out validation. Dual-licensed (MIT core + BSL 1.1 compliance engine).

pxblat

PxBLAT: An Efficient and Ergonomic Python Binding Library for BLAT

genomeworks-cuda-9-2

SDK for GPU accelerated genome assembly and analysis