Amr Python Packages

amr

Functions to simplify and standardise antimicrobial resistance (AMR) data analysis and to work with microbial and antimicrobial properties by using evidence-based methods, as described in https://doi.org/10.18637/jss.v104.i03.

penman

PENMAN notation (e.g. AMR) in Python

amrlib

A python library that makes AMR parsing, generation and visualization simple.

maldiamrkit

Comprehensive toolkit for MALDI-TOF mass spectrometry data preprocessing for antimicrobial resistance (AMR) prediction purposes

respredai

Implementation of the pipeline described in the work "Artificial intelligence model to predict resistances in Gram-negative bloodstream infections" by Bonazzetti et al., npj Digit. Med. 8, 319 (2025)

amr-logic-converter

Convert Abstract Meaning Representation (AMR) into first-order logic

smatchpp

A package for handy processing of semantic graphs such as AMR, with a special focus on standardized evaluation

perin-parser

PERIN is Permutation-Invariant Semantic Parser developed for MRP 2020

transition-neural-parser

SoTA Abstract Meaning Representation (AMR) parsing with word-node alignments in Pytorch. Includes checkpoints and other tools such as statistical significance Smatch.

bacant

This program is designed for annotation of antimicrobal resistance(AMR), transposon(Tn) and integron(In) in bacteria

maldibatchkit

Batch-effect correction methods for MALDI-TOF spectra in clinical AMR prediction workflows

maldideepkit

Catalog of sklearn-compatible deep learning classifiers for MALDI-TOF binned spectra

iec62056-21

A Python library for IEC62056-21, Local Data Readout of Energy Meters. Former IEC1107

amira-amr

A tool to detect acquired AMR genes directly from long read sequencing data.

zensols-amr

AMR annotation and feature generation

unofficial-stog

AMR Parsing as Sequence-to-Graph Transduction

splitfdm

1D Finite-Difference with AMR and steady-state solver using Newton and Split-Newton

splitfvm

1D Finite-Volume with AMR and steady-state solver using Newton and Split-Newton. 2k+ downloads

zensols-clinicamr

This package parses clinical notes in to Abstract Meaning Representation Graphs (AMR).

ndtamr

N-dimensional adaptive mesh refinment tree structure in Python

iec62056-21-dzg

A Python library for IEC62056-21, Local Data Readout of Energy Meters. Former IEC1107

zensols-alsum

ALignment SUMmarization