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Amr Python Packages

Python packages with the GitHub topic amr. Sorted by relevance, with stars and monthly downloads.
msberends
amr

Functions to simplify and standardise antimicrobial resistance (AMR) data analysis and to work with microbial and antimicrobial properties by using evidence-based methods, as described in https://doi.org/10.18637/jss.v104.i03.

28K 109 22
goodmami
penman

PENMAN notation (e.g. AMR) in Python

19K 150 28
bjascob
amrlib

A python library that makes AMR parsing, generation and visualization simple.

4K 267 41
EttoreRocchi
maldiamrkit

Comprehensive toolkit for MALDI-TOF mass spectrometry data preprocessing for antimicrobial resistance (AMR) prediction purposes

3K 3 1
EttoreRocchi
respredai

Implementation of the pipeline described in the work "Artificial intelligence model to predict resistances in Gram-negative bloodstream infections" by Bonazzetti et al., npj Digit. Med. 8, 319 (2025)

2K 5 0
chanind
amr-logic-converter

Convert Abstract Meaning Representation (AMR) into first-order logic

1K 17 2
flipz357
smatchpp

A package for handy processing of semantic graphs such as AMR, with a special focus on standardized evaluation

857 26 4
ufal
perin-parser

PERIN is Permutation-Invariant Semantic Parser developed for MRP 2020

660 45 7
IBM
transition-neural-parser

SoTA Abstract Meaning Representation (AMR) parsing with word-node alignments in Pytorch. Includes checkpoints and other tools such as statistical significance Smatch.

544 272 56
xthua
bacant

This program is designed for annotation of antimicrobal resistance(AMR), transposon(Tn) and integron(In) in bacteria

527 21 7
EttoreRocchi
maldibatchkit

Batch-effect correction methods for MALDI-TOF spectra in clinical AMR prediction workflows

457 1 0
EttoreRocchi
maldideepkit

Catalog of sklearn-compatible deep learning classifiers for MALDI-TOF binned spectra

443 0 0
pwitab
iec62056-21

A Python library for IEC62056-21, Local Data Readout of Energy Meters. Former IEC1107

434 84 24
Danderson123
amira-amr

A tool to detect acquired AMR genes directly from long read sequencing data.

343 28 2
plandes
zensols-amr

AMR annotation and feature generation

340 2 1
sheng-z
unofficial-stog

AMR Parsing as Sequence-to-Graph Transduction

313 156 36
gpavanb1
splitfdm

1D Finite-Difference with AMR and steady-state solver using Newton and Split-Newton

313 2 0
gpavanb1
splitfvm

1D Finite-Volume with AMR and steady-state solver using Newton and Split-Newton. 2k+ downloads

313 5 0
plandes
zensols-clinicamr

This package parses clinical notes in to Abstract Meaning Representation Graphs (AMR).

192 0 0
adamdempsey90
ndtamr

N-dimensional adaptive mesh refinment tree structure in Python

108 18 6
pwitab
iec62056-21-dzg

A Python library for IEC62056-21, Local Data Readout of Energy Meters. Former IEC1107

92 84 24
plandes
zensols-alsum

ALignment SUMmarization

31 0 0
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