Biodiversity Python Packages

pyinaturalist

Python client for iNaturalist

pygbif

GBIF Python client

pytorchwildlife

Microsoft AI for Good Lab — Biodiversity research hub. Open-source AI models, edge devices, and tools for biodiversity monitoring and conservation. Hosts SPARROW-Studio at /SPARROW-Studio. Your source for MegaDetector, SPARROW, PytorchWildlife, Bioacoustics, and more.

python-dwca-reader

🐍 A Python package to read Darwin Core Archive (DwC-A) files.

stemflow

A package for Adaptive Spatio-Temporal Exploratory Model (AdaSTEM) in python

aoh

Area of Habitat calculation code for biodiversity assessment pipelines

pyinaturalist-convert

Data conversion tools for iNaturalist observations and taxonomy

afscgap

Python-based tools for NOAA AFSC GAP marine species surveys data

ipybd

Powerful data cleaner for biodiversity

naturtag

Tag your nature photos with iNat taxonomy and observation metadata

wiutils

Exploration utilities for Wildlife Insights projects.

regi0

A Python package to complement and verify biological records

dwca-writer

Python package for writing Darwin Core Archives (DwC-A)

bdcctools

A Python package to complement and verify biological records

specimux

High-performance dual barcode and primer demultiplexer for MinION sequenced reads, optimized for fungal DNA barcoding.

gbif-dl

GBIF classification dataloaders

pyinaturalist-open-data

Python utilities for working with inaturalist-open-data

python-eml

Python package containing dataclasses for the Ecological Metadata Language (EML) standard

spsearch

python tools to get species data from various API, like IUCN Red List or Encyclopedia of Life.