Biological Expression Language Python Packages

pybel

🌶️ An ecosystem in Python for working with the Biological Expression Language (BEL)

bel-resources

Utilities for BEL resource files.

bio2bel

A Python framework for integrating biological databases and structured data sources in Biological Expression Language (BEL)

pybel-tools

A PyBEL extension for analyzing BEL graphs

bio2bel-hgnc

Hugo Gene Nomenclature Consortium (HGNC) to BEL

bio2bel-wikipathways

Integration of pathway-related information from WikiPathways in BEL

bio2bel-kegg

A Bio2BEL package for integrating pathway-related information from KEGG in BEL

bio2bel-reactome

Integration of pathway-related information from Reactome in BEL

bio2bel-chebi

A Bio2BEL package for converting Chemical Entities of Biological Interest (ChEBI) to BEL

bel-repository

A utility for loading data from repositories of BEL documents

bio2bel-entrez

A Bio2BEL package for converting Entrez and HomoloGene to BEL

pathme

Harmonizing pathway databases using Biological Expression Language (BEL)

hbp-knowledge

Knowledge curated in BEL from full text during the Human Brain Pharmacome project

bio2bel-mirtarbase

A package for converting miRTarBase to BEL

bio2bel-mirbase

A Bio2BEL package for miRBase (http://www.mirbase.org)

pybel-cx

A PyBEL extension for interconversion with CX

bel-enrichment

A package for generating curation sheets for rationally enriching a BEL graph using INDRA and PyBEL

pybel-jupyter

A PyBEL extension for Jupyter notebooks

bel2scm

Generate dynamic structural causal models from biological knowledge graphs encoded in the Biological Expression Language (BEL)

bio2bel-drugbank

A Bio2BEL package for DrugBank (https://www.drugbank.ca)

bio2bel-interpro

A Bio2BEL package for converting InterPro to BEL

bio2bel-uniprot

UniProt Knowledge Base to BEL

bio2bel-expasy

A Bio2BEL package for converting ExPASy to BEL

bel-commons

An environment for curating, validating, and exploring knowledge assemblies encoded in BEL