Blast Python Packages

gget

🧬 gget enables efficient querying of genomic reference databases

40K 1K 85

datasus-dbc

Decompress DATASUS's dbc files into dbf files in python.

6K 5 0

pypdb

A Python API for the RCSB Protein Data Bank (PDB)

5K 335 76

jcvi

Python utility libraries on genome assembly, annotation and comparative genomics

3K 901 199

moose-classifier

Alignment based taxonomic classifier

934 0 1

akrup

AKRUP: ancestral karyotype reconstruction universal pipeline

917 4 1

primerserver2

PrimerServer2: a high-throughput primer design and specificity-checking platform

866 82 15

pyncbitk

Cython bindings and Python interface to the NCBI C++ ToolKit (including BLAST+).

756 11 0

pyncbitk-runtime

Cython bindings and Python interface to the NCBI C++ ToolKit (including BLAST+).

661 11 0

elastic-blast

ElasticBLAST is a cloud-based tool to perform your BLAST searches faster and make you more effective

583 69 22

genome-collector

:stars: Easily download genomes and build BLAST/Bowtie indexes in Python

227 22 0

spestimator

A tool to predict bacterial species from fasta files using RefSeq 16S.

186 0 0

hpcblast

No description available

185 4 1

blastmining

Mining NCBI BLAST output

180 7 1

orthoevol

An easy to use and comprehensive python package which aids in the analysis and visualization of orthologous genes. 🐵

150 28 5

datasnakes

An easy to use and comprehensive python package which aids in the analysis and visualization of orthologous genes. 🐵

144 28 5

decouphage

The art of decorating a phage genome by gluing feature cutouts into it.

125 5 2

emirpred

EmiRPred: A computational approach to predict exosomal and non-exosomal miRNA

68 1 0

transfacpred

A method to predict the transcription factors using protein sequences.

62 6 2

mirnablast

Use mature query miRNA sequences to BLAST the genome, fold the flanking sequences of the subjects to find possible homologous miRNA locus

57 2 0