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Brain Python Packages

Python packages with the GitHub topic brain. Sorted by relevance, with stars and monthly downloads.
bids-standard
pybv

A lightweight I/O utility for the BrainVision data format, written in Python.

42K 24 13
brainglobe
brainglobe-atlasapi

A Python interface to access neuroanatomical atlases

15K 179 65
openbraininstitute
bluecellulab

Biologically detailed neural network simulations and analysis API

11K 4 2
adalca
neurite

Neural networks toolbox focused on medical image analysis

8K 375 77
FZJ-INM1-BDA
siibra

Software interfaces for interacting with brain atlases - Python client

6K 58 12
mne-tools
mne-lsl

A framework for real-time brain signal streaming with MNE-Python.

5K 83 35
brainglobe
brainreg

Automated 3D brain registration with support for multiple species and atlases.

3K 146 37
brainglobe
bg-atlasapi

A Python interface to access neuroanatomical atlases

3K 179 65
navis-org
fafbseg

Tools to work with the FlyWire connectome. Fully interoperable with navis.

2K 21 9
BrainLesion
brainles-preprocessing

preprocessing tools for multi-modal 3D brain imaging

2K 31 8
schlegelp
flybrains

Transforms for navis that enable mapping between different Drosophila template brains.

2K 19 3
MIPLabCH
nigsp

NiGSP: a module for graph signal processing on neuroimaging data

1K 21 13
BlueBrain
neurodamus

A BBP Simulation Control application for NEURON

1K 9 9
robertZaufall
mindm

Python library for interacting with local installed MindManager(tm) on Windows and MacOS platform.

923 5 0
abysslover
deepparcellation

DeepParcellation: deep learning for robust brain MRI parcellation of elderly East Asians

772 6 1
BlueBrain
brayns

Brayns Python API

645 305 47
MariusCausemann
brainseg-containers

wrapper for brain segmentation tools

643 0 0
brainglobe
brainreg-napari

Automated 3D brain registration in napari with support for multiple species and atlases.

481 16 5
robertZaufall
mindm-mcp

MindManager MCP Server for Automation and Integration on Win + macOS

473 10 5
fphammerle
freesurfer-surface

Python Library to Read and Write Surface Files in Freesurfer's TriangularSurface Format

416 9 0
dfsp-spirit
brainload

A python module designed to reduce your brain load while accessing FreeSurfer brain surface and morphometry data files of single subjects and groups.

416 10 1
Open-Minds-Lab
mrqa

mrQA: tools for quality assurance in medical imaging datasets, including protocol compliance

398 14 6
RealityBending
pyllusion

A Parametric Framework to Generate Visual Illusions using Python

395 79 9
brainspinner
cvasl

A package for analysis of MRI

392 4 2
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