Computational Neuroscience Python Packages

efel

Electrophys Feature Extraction Library

93K 9 0

brian2

Brian is a free, open source simulator for spiking neural networks.

43K 1K 284

bluepyopt

Blue Brain Python Optimisation Library

16K 8 0

bluepyefe

BluePyEfe: Blue Brain Python E-feature extraction

8K 4 0

neurolib

Easy whole-brain modeling for computational neuroscientists 🧠💻👩🏿‍🔬

4K 471 96

pointprocess

A C++ Library for Point Process Analysis

2K 8 2

ratinabox

A python package for simulating movement and spatial cell types (e.g. place cells, grid cells) in continuous environments.

2K 255 52

hypercube-hopfield

Python bindings for HypercubeHopfield: modern Hopfield associative memory on hypercube graphs

2K 1 0

driada

Population and element-level analysis of neuronal computations

1K 10 0

ngclearn

NGC-Learn: Computational Neuroscience Simulation and NeuroAI Design in Python

1K 183 34

brian2cuda

A brian2 extension to simulate spiking neural networks on GPUs

1K 73 21

cleosim

Closed-Loop, Electrophysiology, and Optophysiology experiment simulation testbed for mesoscale neuroscience

1K 20 1

openretina

Open source retina model architectures and training setups

960 19 4

neurotune

A Python library for optimising neuronal models

797 18 11

zpe-neuro

ZPE-Neuro V0.0: DETERMINISTIC NEURAL SIGNAL CODEC: Extracellular Spikes | Neuropixels | DANDI-Anchored | IBL Validated | Spike Train Transport

746 0 0

biosimulators-pyneuroml

pyNeuroML simulation program via BioSimulators-compliant command-line interface and Docker container

661 1 0

tklfp

Lightweight package for computing the kernel LFP approximation from Teleńczuk et al., 2020

619 1 0

wslfp

Weighted Sum Local Field Potentials - Implementation of the proxy method for point neurons from Mazzoni, Lindén et al., 2015

514 1 0

foveatorch

Differentiable foveated vision for Deep Learning methods

510 6 1

neurosig-analyseur

analyseur is a module for analyzing (potentially) myriad models developed (or involved) in Dr. Benoît Girard’s lab

407 0 0

sim2bids

App to preprocess and convert simulation data

382 4 2

esi-syncopy

A toolkit for user-friendly large-scale electrophysiology data analysis. Syncopy is compatible with the Matlab toolbox FieldTrip.

339 55 17

neuromodels

Computational neuroscience models and model tools.

302 0 1

pyorganoid

A Python package for the simulation of organoids for the purpose of studying Organoid Intelligence (OI) and Organoid Learning (OL).

294 9 1