Cwl Python Packages | PyPI Stats

cwltool

Common Workflow Language reference implementation

339K 371 241

rocrate

Python library for RO-Crate

244K 81 35

cwl-utils

Python utilities for CWL

244K 42 25

cwl-upgrader

Upgrade CWL syntax to a newer version

224K 7 4

cwltest

Framework for testing CWL tools and workflows

107K 20 18

toil

A WDL, CWL and Python API supporting easy-to-use workflow engine. It is scalable, efficient and cross-platform (Linux/macOS).

32K 929 244

galaxy2cwl

Standalone version tool to get cwl descriptions (initially an abstract cwl interface) of galaxy workflows and Galaxy workflows executions.

21K 6 6

tibanna

Tibanna helps you run your genomic pipelines on Amazon cloud (AWS). It is used by the 4DN DCIC (4D Nucleome Data Coordination and Integration Center) to process data. Tibanna supports CWL/WDL (w/ docker), Snakemake (w/ conda) and custom Docker/shell command.

13K 72 28

cwlformat

A very opinionated code formatter for CWL

6K 10 4

cwlprov

cwlprov: Command line tool and Python API to explore Research Objects containing provenance of Common Workflow Language executions

5K 4 3

cwl-runner

Repository for the CWL standards. Use https://cwl.discourse.group/ for support 😊

5K 1K 193

janis-pipelines

[Alpha] Janis: an open source tool to machine generate type-safe CWL and WDL workflows

4K 44 12

arctrl

Polyglot (.NET/JS/Python) library for management of Annotated Research Contexts (ARCs) using an in-memory representation and runtime-agnostic contract systems.

4K 19 10