Cython Library Python Packages

pyhmmer

Cython bindings and Python interface to HMMER3.

cyscale

Cython SCALE-Codec

picows

Ultra-fast websocket client and server for asyncio

pyfamsa

Cython bindings and Python interface to FAMSA, an algorithm for ultra-scale multiple sequence alignments.

pyopal

Cython bindings and Python interface to Opal, a SIMD-accelerated database search aligner.

mdl-density-histogram

Cython-accelerated MDL histogram density estimation. Implements Kontkanen & Myllymaki's dynamic programming algorithm for optimal variable-width bins, parametric complexity with Ramanujan approximations, and automatic bin count selection. Based on "MDL Histogram Density Estimation" (JMLR 2007).

gdmath

🚀Spatium: a fast python spatial math library

cyndilib

A Python wrapper for Newtek NDI® written in Cython

cython-npm

Cython project management like npm in nodejs

pytantan

Cython bindings and Python interface to Tantan, a fast method for identifying repeats in DNA and protein sequences.

pyfastani

Cython bindings and Python interface to FastANI, a method for fast whole-genome similarity estimation.

pymemesuite

Cython bindings and Python interface to the MEME suite, a collection of tools for the analysis of sequence motifs.

ugrapheme

Unicode 16.0 Extended grapheme clusters in nanoseconds

spatium

🚀Spatium: a fast python spatial math library

djcompiler

django compiler that compiles django project to a C language using Cython project which gives more performance and more security since the original code is hidden.

pyncbitk

Cython bindings and Python interface to the NCBI C++ ToolKit (including BLAST+).

pyncbitk-runtime

Cython bindings and Python interface to the NCBI C++ ToolKit (including BLAST+).

cbytesparse

Library to handle sparse bytes within a virtual memory space.

cython-package-example

Example of a package with Cython extensions

pyhmmer-arm

Cython bindings and Python interface to HMMER3.

faster-os

Up to 6700% faster OS module.

cb85

Cythonized Base85 encoder and decoder