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Dimensionality Reduction Python Packages

Python packages with the GitHub topic dimensionality-reduction. Sorted by relevance, with stars and monthly downloads.
lmcinnes
umap-learn

Uniform Manifold Approximation and Projection

6.9M 8K 864
pavlin-policar
opentsne

Extensible, parallel implementations of t-SNE

134K 2K 176
JustGlowing
minisom

:red_circle: MiniSom is a minimalistic implementation of the Self Organizing Maps

46K 2K 444
GAA-UAM
scikit-fda

Functional Data Analysis Python package

43K 344 63
cvxgrp
pymde

Minimum-distortion embedding with PyTorch

19K 585 30
trevorprater
pymorton

A lightweight and efficient Python Morton encoder with support for geo-hashing

10K 117 22
KrishnaswamyLab
phate

PHATE (Potential of Heat-diffusion for Affinity-based Transition Embedding) is a tool for visualizing high dimensional data.

9K 546 82
dpeerlab
palantir

Single cell trajectory detection

6K 309 61
TorchDR
torchdr

TorchDR - PyTorch Dimensionality Reduction

4K 202 14
xarray-contrib
xeofs

Comprehensive EOF analysis in Python with xarray: A versatile, multidimensional, and scalable tool for advanced climate data analysis

3K 135 23
nla-group
fabba

An efficient symbolic time series approximation with ABBA.

2K 51 12
bkahan
sphereql

Spherical coordinate knowledge representation — fast semantic search, visualization, and analysis

2K 1 0
beringresearch
ivis

Dimensionality reduction in very large datasets using Siamese Networks

2K 343 43
Advestis
adnmtf

Non-Negative Matrix and Tensor Factorizations

1K 3 1
davisidarta
topometry

Tools for single-cell geometric analysis, clustering and visualization.

1K 106 5
iabs-neuro
driada

Population and element-level analysis of neuronal computations

1K 10 0
berenslab
tsimcne

Visualization tool for unsupervised image visualization (ICLR 2023)

1K 115 14
mcsorkun
chemplot

A python package for chemical space visualization.

1K 152 35
FindHotel
ppca-rs

Python+Rust implementation of the Probabilistic Principal Component Analysis model

927 36 2
ContextLab
timecorr

Estimate dynamic high-order correlations in multivariate timeseries data

776 42 12
jgeofil
mycorrhiza

Mycorrhiza population assignment tools.

733 7 2
ventus550
somu

A simple high-performance implementation of the Self-Organizing Map (SOM) algorithm in Rust, exposed as a Python module.

712 1 0
thieu1995
mafese

Feature Selection using Metaheuristics Made Easy: Open Source MAFESE Library in Python

680 95 26
mpmatthe
evomap

A Python Toolbox for Mapping Evolving Relationship Data

628 24 4
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