Dimensionality Reduction Python Packages

umap-learn

Uniform Manifold Approximation and Projection

opentsne

Extensible, parallel implementations of t-SNE

minisom

:red_circle: MiniSom is a minimalistic implementation of the Self Organizing Maps

scikit-fda

Functional Data Analysis Python package

pymde

Minimum-distortion embedding with PyTorch

pymorton

A lightweight and efficient Python Morton encoder with support for geo-hashing

phate

PHATE (Potential of Heat-diffusion for Affinity-based Transition Embedding) is a tool for visualizing high dimensional data.

palantir

Single cell trajectory detection

torchdr

TorchDR - PyTorch Dimensionality Reduction

xeofs

Comprehensive EOF analysis in Python with xarray: A versatile, multidimensional, and scalable tool for advanced climate data analysis

fabba

An efficient symbolic time series approximation with ABBA.

sphereql

Spherical coordinate knowledge representation — fast semantic search, visualization, and analysis

ivis

Dimensionality reduction in very large datasets using Siamese Networks

adnmtf

Non-Negative Matrix and Tensor Factorizations

topometry

Tools for single-cell geometric analysis, clustering and visualization.

driada

Population and element-level analysis of neuronal computations

tsimcne

Visualization tool for unsupervised image visualization (ICLR 2023)

chemplot

A python package for chemical space visualization.

ppca-rs

Python+Rust implementation of the Probabilistic Principal Component Analysis model

timecorr

Estimate dynamic high-order correlations in multivariate timeseries data

mycorrhiza

Mycorrhiza population assignment tools.

somu

A simple high-performance implementation of the Self-Organizing Map (SOM) algorithm in Rust, exposed as a Python module.

mafese

Feature Selection using Metaheuristics Made Easy: Open Source MAFESE Library in Python

evomap

A Python Toolbox for Mapping Evolving Relationship Data