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Electron Microscopy Python Packages

Python packages with the GitHub topic electron-microscopy. Sorted by relevance, with stars and monthly downloads.
hyperspy
rosettasciio

Python library for reading and writing scientific data format

121K 72 51
seung-lab
cloud-volume

Read and write Neuroglancer datasets programmatically.

34K 171 53
axondeepseg
axondeepseg

Axon/Myelin segmentation using Deep Learning

4K 126 33
LaurentRDC
scikit-ued

Collection of algorithms and routines for (ultrafast) electron diffraction and scattering

4K 155 21
LiberTEM
libertem

Open pixelated STEM framework

3K 124 74
mgrady3
please

PLEASE: The Python Low-energy Electron Analysis SuitE - Enabling rapid analysis and visualization of LEEM and LEED Data.

2K 17 4
rybakov-ks
particleanalyzer

A Computer Vision-Based Tool for Automatic Segmentation and Size Analysis of Nanoparticles in Scanning Electron Microscope (SEM) and Transmission Electron Microscope (TEM) Images

2K 18 4
pycroscopy
atomai

Deep and Machine Learning for Microscopy

2K 229 42
pycroscopy
stemtool

A single package for analyzing atomic resolution STEM, 4D-STEM and STEM-EELS datasets, along with basic STEM simulation functionality

1K 19 2
leon-vv
traceon

Solver and tracer for electrostatic problems

1K 12 7
LiberTEM
libertem-blobfinder

LiberTEM correlation and refinement library

1K 5 3
jtschwar
multimodal-fusion

Multi-Modal Electron Microscopy Data Fusion

1K 5 3
brisvag
stemia

Scripts and Tools for Electron Microscopy Image Analysis.

976 11 1
jtschwar
mapfusion

Fuse multi-modal electron microscopy datasets using inverse problems

795 5 3
instamatic-dev
instamatic

Python program for automated electron diffraction data collection

763 61 30
volume-em
empanada-napari

Panoptic segmentation algorithms for 2D and 3D electron microscopy in napari

700 33 14
by256
imagedataextractor

ImageDataExtractor 2.0 - a Python library for electron microscopy image quantification.

669 21 2
ePSIC-DLS
particlespy

A package to perform particle segmentation and analysis

634 20 11
usnistgov
etspy

Suite of tools for processing and reconstruction of electron tomography data

586 16 6
ELEKTRONN
elektronn3

Utilities for 3D CNNs in PyTorch

527 171 29
C-CINA
focustools

Python utilities for the FOCUS package

520 6 0
LiberTEM
libertem-holo

Electron holography reconstruction and preprocessing routines

455 5 9
google-research
sofima

Scalable Optical Flow-based Image Montaging and Alignment

334 95 20
ArdaGen
tempo4d

High-throughput analysis of Bragg discs from 4D-STEM datasets using ML object detection.

298 0 0
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