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Fair Data Python Packages

Python packages with the GitHub topic fair-data. Sorted by relevance, with stars and monthly downloads.
linkml
schemasheets

Structure your data in a FAIR way using google sheets or TSVs. These are then converted to LinkML, and from there other formats

10K 52 5
abdenlab
oxbow

Oxbow makes genomic data ready for high-performance analytics.

10K 153 15
microbiomedata
nmdc-schema

National Microbiome Data Collaborative (NMDC) unified data model

8K 46 10
Nanopublication
nanopub

Python client for searching, publishing and modifying nanopublications.

5K 32 12
nfdi4plants
arctrl

Polyglot (.NET/JS/Python) library for management of Annotated Research Contexts (ARCs) using an in-memory representation and runtime-agnostic contract systems.

4K 19 10
seedcase-project
seedcase-sprout

Grow structured, organised, and FAIR data

3K 0 1
livMatS
dtool-lookup-api

Python client API for communicating with dserver.

2K 1 0
PyEllips
pyelli

An open source ellipsometry analysis tool for reproducible and comprehensible building of optical models.

2K 36 14
rue-a
provo

PROV-O API for Python

1K 5 0
simula
damast

damast: A Python library to facilitate the creation of reproducible data processing pipelines and usage of FAIR data

1K 1 1
BertainaS
epyr-tools

Professional Python toolkit for EPR spectroscopy data analysis. Load Bruker files, apply baseline correction, analyze lineshapes, and convert to FAIR formats. Complete CLI suite with comprehensive testing.

669 4 2
fligt
fairdatanow

Experimental Python package to support working with data from our Nextcloud server

637 0 1
livMatS
dtool-lookup-gui

Graphical user interface for dtool

571 9 2
sdsc-ordes
gimie

Extract linked metadata from repositories

546 14 2
csiro-fair
marimba

A Python framework for structuring, processing, packaging and distributing FAIR scientific image datasets

501 19 4
MaastrichtU-IDS
fair-test

☑️ A library to build and deploy FAIR metrics tests APIs that can be used by FAIR evaluation services supporting the FAIRMetrics specifications, such as FAIR enough and the FAIR evaluator.

431 8 2
willynilly
same-version

Automatically ensures your software version metadata is consistent across key project files.

356 0 0
MaastrichtU-CDS
linkeddicom

A package to extract DICOM header data and store this in RDF

326 0 0
jic-dtool
dtool-lookup-server

dserver makes dtool datasets findable, hence rendering the dtool ecosystem fit for a FAIR data management world.

324 4 5
jesserobertson
earthchem

Data slurper for getting stuff from Earthchem services

312 16 8
dnlbauer
django-signposting

Add FAIR signpostings to response headers in Django

294 0 0
domna
nexus3d

Convert NXtransformation matrices inside a nexus file to a 3D representation file (e.g. stl or gltf)

276 2 0
romain-girardi-eng
eleutheria

Ancient Philosophy Knowledge Graph - CLI Tools

249 1 0
jic-dtool
dservercore

dserver makes dtool datasets findable, hence rendering the dtool ecosystem fit for a FAIR data management world.

245 4 5
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