Fasta Python Packages

pyfaidx

Efficient pythonic random access to fasta subsequences

pyfastx

a python package for fast random access to sequences from plain and gzipped FASTA/Q files

jupyterlab-mathjax3

Renderers and renderer extensions for JupyterLab

pydna

Clone with Python! Data structures for double stranded DNA & simulation of homologous recombination, Gibson assembly, cut & paste cloning.

jupyterlab-geojson

Renderers and renderer extensions for JupyterLab

fuc

Frequently used commands in bioinformatics

easyfasta

A lightweight Python library for efficient FASTA file parsing and DNA sequence manipulation.

jupyterlab-fasta

Renderers and renderer extensions for JupyterLab

storf-reporter

Package to extract Unannotated Regions from prokaryotic genomes report coding and pseudogenised genes delimited by stop codons - Named StORFs (Stop - Open Reading Frames)

filterx

process any file in tabular format. Fasta/fastq/GTF/GFF/VCF/SAM/BED

minifasta

An small FASTA toolbox for small to medium size projects without dependencies.

fastaparser

A Python FASTA file Parser and Writer.

biobase

A home for all biological/bioinformatics constants from protein strings to BLOSUM matrices.

jupyterlab-mathjax2

Renderers and renderer extensions for JupyterLab

protgraph

ProtGraph - A Graph-Generator for Proteins

jupyterlab-katex

Renderers and renderer extensions for JupyterLab

fastaframes

Convert between UniProt FASTA files and pandas DataFrames.

dnadesign

A lua package for designing DNA.

smof

Explore and analyze biological sequence data

chromdetect

Detect chromosome-level scaffolds in genome assemblies with inconsistent naming conventions

bacant

This program is designed for annotation of antimicrobal resistance(AMR), transposon(Tn) and integron(In) in bacteria

bioino

💻 Interconverting FASTA, GFF, and CSV.

jupyterlab-vega3

Renderers and renderer extensions for JupyterLab

fundedness

Python financial planning toolkit with CEFR fundedness, Monte Carlo retirement sims, withdrawal strategy comparisons, and interactive Plotly visuals (Streamlit + FastAPI).