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Fasta Python Packages

Python packages with the GitHub topic fasta. Sorted by relevance, with stars and monthly downloads.
mdshw5
pyfaidx

Efficient pythonic random access to fasta subsequences

876K 485 76
lmdu
pyfastx

a python package for fast random access to sequences from plain and gzipped FASTA/Q files

88K 294 24
jupyterlab
jupyterlab-mathjax3

Renderers and renderer extensions for JupyterLab

42K 515 80
pydna-group
pydna

Clone with Python! Data structures for double stranded DNA & simulation of homologous recombination, Gibson assembly, cut & paste cloning.

22K 224 48
jupyterlab
jupyterlab-geojson

Renderers and renderer extensions for JupyterLab

10K 515 80
sbslee
fuc

Frequently used commands in bioinformatics

7K 58 8
rLannes
easyfasta

A lightweight Python library for efficient FASTA file parsing and DNA sequence manipulation.

5K 1 1
jupyterlab
jupyterlab-fasta

Renderers and renderer extensions for JupyterLab

4K 515 80
NickJD
storf-reporter

Package to extract Unannotated Regions from prokaryotic genomes report coding and pseudogenised genes delimited by stop codons - Named StORFs (Stop - Open Reading Frames)

3K 17 2
dwpeng
filterx

process any file in tabular format. Fasta/fastq/GTF/GFF/VCF/SAM/BED

3K 23 0
not-a-feature
minifasta

An small FASTA toolbox for small to medium size projects without dependencies.

2K 4 2
Kronopt
fastaparser

A Python FASTA file Parser and Writer.

2K 17 1
lignum-vitae
biobase

A home for all biological/bioinformatics constants from protein strings to BLOSUM matrices.

1K 12 5
jupyterlab
jupyterlab-mathjax2

Renderers and renderer extensions for JupyterLab

1K 515 80
mpc-bioinformatics
protgraph

ProtGraph - A Graph-Generator for Proteins

872 13 8
jupyterlab
jupyterlab-katex

Renderers and renderer extensions for JupyterLab

695 515 80
pgarrett-scripps
fastaframes

Convert between UniProt FASTA files and pandas DataFrames.

583 5 0
koeng101
dnadesign

A lua package for designing DNA.

580 38 1
incertae-sedis
smof

Explore and analyze biological sequence data

561 17 3
shandley
chromdetect

Detect chromosome-level scaffolds in genome assemblies with inconsistent naming conventions

561 0 0
xthua
bacant

This program is designed for annotation of antimicrobal resistance(AMR), transposon(Tn) and integron(In) in bacteria

527 21 7
scbirlab
bioino

💻 Interconverting FASTA, GFF, and CSV.

517 1 0
jupyterlab
jupyterlab-vega3

Renderers and renderer extensions for JupyterLab

476 515 80
engineerinvestor
fundedness

Python financial planning toolkit with CEFR fundedness, Monte Carlo retirement sims, withdrawal strategy comparisons, and interactive Plotly visuals (Streamlit + FastAPI).

439 1 1
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