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Fluorescence Microscopy Imaging Python Packages

Python packages with the GitHub topic fluorescence-microscopy-imaging. Sorted by relevance, with stars and monthly downloads.
cgohlke
ptufile

Read and write PicoQuant PTU and related files (PHU, PCK, PCO, PFS, PUS, PQRES, PQDAT, PQUNI, SPQR, and BIN).

16K 18 1
cgohlke
lfdfiles

Laboratory for Fluorescence Dynamics (LFD) file formats.

11K 11 4
cgohlke
sdtfile

Read Becker & Hickl SDT files.

9K 14 8
phasorpy
phasorpy

An open-source Python library for the analysis of luminescence lifetime and hyperspectral images using the phasor approach.

6K 37 15
cgohlke
psf

Point Spread Function calculations for fluorescence microscopy.

6K 44 4
cgohlke
liffile

Read Leica image files (LIF, LOF, XLIF, XLCF, XLEF, and LIFEXT).

5K 11 1
cgohlke
oiffile

Read Olympus image files (OIF and OIB).

5K 13 1
cgohlke
fbdfile

Read FLIMbox data and related files (FBD, FBF, and FBS.XML).

5K 1 0
cgohlke
chebyfit

Fit exponential and harmonic functions using Chebyshev polynomials.

4K 2 1
bbquercus
efishent

RNA FISH oligos/probes design tool.

2K 14 0
fluorescence-tools
tttrlib

File format agnostic low level, high performance API to read and process time-tagged-time resolved (TTTR) data for single-molecule and image spectroscopy)

2K 23 3
cgohlke
oirfile

Read Olympus/Evident OIR and POIR files.

2K 3 1
joemans3
ams-bp

Advanced Microscopy Simulations - Create realistic fluorescence microscopy data!

1K 3 0
Dana-Farber-AIOS
pathml

Tools for computational pathology

1K 451 89
cgohlke
icsdll

Interface to the image correlation spectroscopy library ICSx64.dll.

966 2 1
shanizu
fuse-toolkit

FUSE toolkit supports fluorescent cell image alignment and analysis.

899 0 3
wisstock
domb-napari

napari plugin for analyzing the redistribution of fluorescence-labeled proteins

558 1 0
alexblaessle
pyfrp

PyFRAP: A Python based FRAP analysis tool box

405 17 9
lens-biophotonics
zetastitcher

ZetaStitcher is a tool designed to stitch large volumetric images such as those produced by Light-Sheet Fluorescence Microscopes.

227 46 7
Jhsmit
colicoords

Single-cell fluorescence microscopy data analysis

217 26 8
VicidominiLab
birfi

Blind instrument response function identification from fluorescence decays

142 1 1
cgohlke
obffile

Read Imspector object binary format files (OBF and MSR)

120 1 0
cgohlke
napari-sdtfile

Read Becker & Hickl SDT files.

71 14 8
cgohlke
napari-oiffile

Read Olympus image files (OIF and OIB).

67 13 1
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