Fluorescence Python Packages | PyPI Stats

labellib

Library for coarse-grained simulations of probes flexibly coupled to biomolecules.

3K 9 3

fretbursts

Burst analysis toolkit for single and multi-spot smFRET data.

3K 13 12

rosettax

Interactive flow cytometry calibration software for fluorescence and scattering workflows, with FCS loading, peak finding, fitting, profiles, and reusable calibration exports.

3K 0 0

opticalmapping

An open-source python library for the processing of fluorescence video data

3K 17 2

tttrlib

File format agnostic low level, high performance API to read and process time-tagged-time resolved (TTTR) data for single-molecule and image spectroscopy)

2K 23 3

cytoflow

Python tools for quantitative, reproducible flow cytometry analysis

2K 214 58

nellie

Automated organelle segmentation, tracking, and hierarchical feature extraction in 2D/3D live-cell microscopy

2K 94 13

optimap

An open-source python library for the processing of fluorescence video data

1K 17 2

flika

An interactive image processing program for biologists written in Python.

985 25 2

icsdll

Interface to the image correlation spectroscopy library ICSx64.dll.

966 2 1

cindra

Provides pipelines for processing neural imaging data and tracking Regions of Interest across multiple recordings.

876 0 0

lifefit

Analyze fluorescence lifetime and anisotropy decays.

791 9 4

papylio

Single-molecule fluorescence data extraction and analysis.

698 0 3

corrct

Physically corrected projectors for X-ray induced emission CT.

694 9 3

ifpd

An iFISH probe design pipeline, with web interface included.

557 12 6

imswitch

Microscopy control

456 85 39

cellector

A pipeline and GUI for determining which ROIs match features in a fluorescence image.

455 2 0

smo

Robust and unbiased estimation of the background distribution for fluorescence microscopy.

423 13 5

hts-tools

Parsing and analysing platereader absorbance and fluorescence data.

328 0 1

calciumflexanalysis

Read and interpret calcium flux assays

291 0 0

cytoself

An image feature extractor with self-supervised learning

222 85 16

pyeem

Python library for the preprocessing, correction, deconvolution and analysis of Excitation Emission Matrices (EEMs).

196 7 1

birfi

Blind instrument response function identification from fluorescence decays

142 1 1

fish-prode

iFISH Probe Design: a Python3 package to build iFISH probes.

123 12 6