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Fmri Python Packages

Python packages with the GitHub topic fmri. Sorted by relevance, with stars and monthly downloads.
nilearn
nilearn

Machine learning for NeuroImaging in Python

296K 1K 654
hed-standard
hedtools

Python validation, summary, and analysis tools for HED (Hierarchical Event Descriptors).

23K 18 12
juaml
junifer

Forschungszentrum Jülich Neuroimaging Feature Extractor

19K 15 13
ME-ICA
tedana

TE-dependent analysis of multi-echo fMRI

10K 183 104
donishadsmith
neurocaps

Co-activation Patterns (CAPs) Python package

7K 18 5
nipreps
fmriprep

fMRIPrep is a robust and easy-to-use pipeline for preprocessing of diverse fMRI data. The transparent workflow dispenses of manual intervention, thereby ensuring the reproducibility of the results.

6K 731 314
dPys
pynets

A Reproducible Workflow for Structural and Functional Connectome Ensemble Learning

5K 125 41
ZitongLu1996
neurora

A Python Toolbox for Multimode Neural Data Representation Analysis - A Representational Analysis Toolbox for Neuroscience, including Neural Pattern Similarity (NPS), Representational Similarity Analysis (RSA), Spatiotemporal Pattern Similarity (STPS) & Inter-Subject Correlation (ISC)

5K 197 33
nipreps
fmriprep-docker

fMRIPrep is a robust and easy-to-use pipeline for preprocessing of diverse fMRI data. The transparent workflow dispenses of manual intervention, thereby ensuring the reproducibility of the results.

5K 731 314
BIDS-Apps
rshrf

Resting state HRF estimation from BOLD-fMRI signal

3K 40 14
raamana
visualqc

VisualQC : assistive tool to ease the quality control workflow of neuroimaging data.

2K 76 14
smoia
phys2cvr

python module to compute cerebrovascular reactivity mapping and other related maps

2K 6 23
brainiak
brainiak

Brain Imaging Analysis Kit

2K 370 143
Paradigm-Free-Mapping
pyspfm

Blind sparse hemodynamic deconvolution methods for fMRI data

2K 4 6
nipreps
nibabies

Processing workflows for magnetic resonance images of the brain in infants

1K 39 15
nipreps
nibabies-wrapper

fMRIPrep Lifespan - A robust, transparent workflow tailored for neonate and infant MRI

1K 39 15
Donders-Institute
multiecho

Combine multiple-echoes from a multi-echo BOLD fMRI acquisition.

1K 7 3
elliohow
frat-brain

Application for ROI fMRI data analysis.

1K 13 4
rmldj
hcp-utils

Utilities to use HCP and HCP-like data with nilearn and other Python tools

920 52 9
paulcbogdan
nichord

Creates chord diagrams for connectivity/graph data

865 105 11
ColeLab
actflow

The Brain Activity Flow (Actflow) Toolbox. Tools to quantify the relationship between connectivity and task activity through network simulations and machine learning prediction. Helps determine how connections contribute to specific brain functions.

664 47 14
FL33TW00D
rust-dtw

A rust implementation of dynamic time warping with python bindings!

613 27 2
KappnKrunch
fmri-volumetric-renderer

A volumetric fMRI renderer for Jupyter Notebook

562 0 0
smoia
niutils

Various utilities to fast-track some boring python coding.

528 1 2
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