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Genomics Visualization Python Packages

Python packages with the GitHub topic genomics-visualization. Sorted by relevance, with stars and monthly downloads.
moshi4
pycirclize

Circular visualization in Python (Circos Plot, Chord Diagram, Radar Chart)

23K 1K 60
moshi4
pygenomeviz

A genome visualization python package for comparative genomics

6K 401 25
daler
trackhub

create, manage, and upload track hubs for use in the UCSC genome browser

2K 55 20
hoffmangroup
segway

Application for semi-automated genomic annotation.

1K 18 8
GMOD
jbrowse-jupyter

A python package for showing JBrowse views

1K 27 4
xinglab-ai
genomap

Cartography of Genomic Interactions Enables Deep Analysis of Single-Cell Expression Data (Nature Communications, 2023)

955 19 5
robotoD
genovi

GenoVi, an automated customizable circular genome visualizer for bacteria and archaea

701 105 12
BodduSriPavan-111
kitikiplot

KitikiPlot A Python library to visualize categorical sliding window data

679 16 0
bioinfocz
exp-heatmap

Extended Cross-Population (ExP) Heatmap

663 3 0
moshi4
gbkviz

Easy-to-use web application for visualization and comparison of genomes in Genbank file

566 22 5
cmdoret
tinycov

Command line tool to plot genomic coverage from a BAM file

421 14 5
brwnj
covviz

Multi-sample genome coverage viewer to observe large, coverage-based anomalies alongside annotations and sample metadata

362 58 7
IPK-BIT
divbrowse

A web application for interactive visualization and exploratory data analysis of variant call matrices

306 21 3
ikergarcia1996
gene2tab

This script is used to convert the output of ABRICATE tabulated output into a matrix samples with the genes as columns and the presence/absence of the gene as the values.

276 0 0
outbreak-info
python-outbreak-info

Python package to access the genomics and epidemiology data and Research Library metadata compiled and standardized on outbreak.info

198 6 2
moshi4
mgcplotter

Microbial Genome Circular plotting tool for comparative genomics using Circos

174 38 8
AminMahpour
wigman

Generate heatmap plots from genomic BigWig data

105 2 0
ondra-m
exp-selection

No description available

73 2 0
ccneko
omacase

an open-source (GPLv3) standalone Python package to analyze optical mapping data, with de novo repeat motif detection and analysis capabilities

67 2 0
outbreak-info
python-outbreak-data

Python package to access the genomics and epidemiology data and Research Library metadata compiled and standardized on outbreak.info

1 6 2
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