Medical Image Analysis Python Packages

torchxrayvision

TorchXRayVision: A library of chest X-ray datasets and models. Classifiers, segmentation, and autoencoders.

torchio

Medical imaging processing for AI applications.

medmnist

[pip install medmnist] 18x Standardized Datasets for 2D and 3D Biomedical Image Classification

tiatoolbox

Computational Pathology Toolbox developed by TIA Centre, University of Warwick.

lungmask

Automated lung segmentation in CT

miscnn

A framework for Medical Image Segmentation with Convolutional Neural Networks and Deep Learning

unigradicon

uniGradICON: A Foundation Model for Medical Image Registration (MICCAI 2024)

deepbrainseg

Fully automatic brain tumour segmentation using Deep 3-D convolutional neural networks

dlicv

A repository that allows users to apply the DLICV method to their brain imaging data.

aucmedi

a framework for Automated Classification of Medical Images

dosma

An AI-powered open-source medical image analysis toolbox

guava-rt

A geometrical upright-supine anatomical variation analysis framework

mediml

Python Open-source package for medical images processing and radiomics features extraction.

digipathai

Tool to visualize gigantic pathology images and use AI to segment cancer cells and present as an overlay

medimage-pkg

Python Open-source package for medical images processing and radiomics features extraction.

pykale

Knowledge-Aware machine LEarning (KALE): accessible machine learning from multiple sources for interdisciplinary research, part of the 🔥PyTorch ecosystem. ⭐ Star to support our work!

radvis

RadVis (Radiology Visualization) is a visualization tool for medical images.

auditapp

AUDIT - Analysis & Evaluation Dashboard of Artificial Intelligence

ts2d

TotalSegmentator 2D: A Tool for Rapid Anatomical Structure Analysis

medigan

medigan is a modular open-source Python library that provides an interface to multiple generative models and automates synthetic dataset generation.

mpunet

Multi-Planar UNet for autonomous segmentation of 3D medical images

mridc

Data Consistency Toolbox for Magnetic Resonance Imaging

atommic

ATOMMIC: Advanced Toolbox for Multitask Medical Imaging Consistency

miscnn-tf-2-0

Framework for Medical Image Segmentation with Convolutional Neural Networks and Deep Learning