Medical Image Processing Python Packages

monai

AI Toolkit for Healthcare Imaging

torchxrayvision

TorchXRayVision: A library of chest X-ray datasets and models. Classifiers, segmentation, and autoencoders.

torchio

Medical imaging processing for AI applications.

histomicstk

A Python toolkit for pathology image analysis algorithms.

rt-utils

A minimal Python library to facilitate the creation and manipulation of DICOM RTStructs.

monai-weekly

AI Toolkit for Healthcare Imaging

itk-tubetk

TubeTK is an open-source toolkit for the segmentation, registration, and analysis of tubes and surfaces in images, developed by Kitware, Inc.

dicomrttool

Tools to help with the conversion of DICOM images, RT Structures, and dose to useful Python objects. Essentially DICOM to NumPy and SimpleITK Images

lungmask

Automated lung segmentation in CT

miscnn

A framework for Medical Image Segmentation with Convolutional Neural Networks and Deep Learning

mipcandy

Build a complete experiment pipeline for your PyTorch MIP model in 10 seconds.

medimgproc

Medical Image Processing module for viewing and editing.

medvision

A python library for medical image computer vision.

dicom2jpg

A simple Python function tool to convert DICOM files into jpg/png/bmp/tiff files and numpy.ndarray

chameleoniq

ChameleonIQ: Nema-aware Image Quality Tool for Python

dlicv

A repository that allows users to apply the DLICV method to their brain imaging data.

mediml

Python Open-source package for medical images processing and radiomics features extraction.

tdsc-abus2023-pytorch

Grand Challenge TDSC ABUS 2023 dataset for pytorch

plotscrollnumpyarrays

Tools to help with the conversion of DICOM images, RT Structures, and dose to useful Python objects. Essentially DICOM to NumPy and SimpleITK Images

medimage-pkg

Python Open-source package for medical images processing and radiomics features extraction.

pfla

pfla: Python Facial Landmark Analysis

autorad

The easiest tool for experimenting with radiomics features.

pyplastimatch

Python wrapper for Plastimatch.

radvis

RadVis (Radiology Visualization) is a visualization tool for medical images.