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Medical Imaging Python Packages

Python packages with the GitHub topic medical-imaging. Sorted by relevance, with stars and monthly downloads.
InsightSoftwareConsortium
itk-io

Insight Toolkit (ITK) -- Official Repository. ITK builds on a proven, spatially-oriented architecture for processing, segmentation, and registration of scientific images in two, three, or more dimensions.

152K 2K 726
InsightSoftwareConsortium
itk-registration

Insight Toolkit (ITK) -- Official Repository. ITK builds on a proven, spatially-oriented architecture for processing, segmentation, and registration of scientific images in two, three, or more dimensions.

147K 2K 726
InsightSoftwareConsortium
itk-filtering

Insight Toolkit (ITK) -- Official Repository. ITK builds on a proven, spatially-oriented architecture for processing, segmentation, and registration of scientific images in two, three, or more dimensions.

146K 2K 726
InsightSoftwareConsortium
itk-core

Insight Toolkit (ITK) -- Official Repository. ITK builds on a proven, spatially-oriented architecture for processing, segmentation, and registration of scientific images in two, three, or more dimensions.

144K 2K 726
InsightSoftwareConsortium
itk

Insight Toolkit (ITK) -- Official Repository. ITK builds on a proven, spatially-oriented architecture for processing, segmentation, and registration of scientific images in two, three, or more dimensions.

144K 2K 726
InsightSoftwareConsortium
itk-numerics

Insight Toolkit (ITK) -- Official Repository. ITK builds on a proven, spatially-oriented architecture for processing, segmentation, and registration of scientific images in two, three, or more dimensions.

143K 2K 726
InsightSoftwareConsortium
itk-segmentation

Insight Toolkit (ITK) -- Official Repository. ITK builds on a proven, spatially-oriented architecture for processing, segmentation, and registration of scientific images in two, three, or more dimensions.

137K 2K 726
mlmed
torchxrayvision

TorchXRayVision: A library of chest X-ray datasets and models. Classifiers, segmentation, and autoencoders.

95K 1K 248
dipy
dipy

DIPY is the paragon 3D/4D+ medical imaging library in Python. Contains generic methods for spatial normalization, signal processing, machine learning, statistical analysis and visualization of medical images. Additionally, it contains specialized methods for computational anatomy including diffusion, perfusion and structural imaging.

82K 819 497
antsx
antspyx

A fast medical imaging analysis library in Python with algorithms for registration, segmentation, and more.

65K 861 178
MedMNIST
medmnist

[pip install medmnist] 18x Standardized Datasets for 2D and 3D Biomedical Image Classification

44K 1K 207
Project-MONAI
monai-generative

MONAI Generative Models makes it easy to train, evaluate, and deploy generative models and related applications

30K 754 109
EIDOSlab
torchstain

Stain normalization tools for histological analysis and computational pathology

29K 179 30
rapidsai
cucim

cuCIM - RAPIDS GPU-accelerated image processing library

26K 456 81
qurit
rt-utils

A minimal Python library to facilitate the creation and manipulation of DICOM RTStructs.

22K 255 73
girder
django-large-image

🩻 🗺️ Django endpoints for working with large images for tile serving

22K 68 4
rapidsai
cucim-cu12

cuCIM - RAPIDS GPU-accelerated image processing library

19K 456 81
albumentations-team
albumentationsx

Next-generation Albumentations: dual-licensed for open-source and commercial use

16K 315 28
aignostics
aignostics

🔬 Python SDK providing access to the Aignostics Platform. Includes Aignostics Launchpad (Desktop Application), Aignostics CLI (Command-Line Interface), example notebooks, and Aignostics Client Library.

16K 14 5
AMYPAD
miutil

Basic functionality needed for AMYPAD

9K 0 2
brianmanderson
dicomrttool

Tools to help with the conversion of DICOM images, RT Structures, and dose to useful Python objects. Essentially DICOM to NumPy and SimpleITK Images

8K 108 30
adalca
neurite

Neural networks toolbox focused on medical image analysis

8K 375 77
raamana
protocol

generic framework to develop protocols, with an initial focus medical imaging acquisition

6K 0 1
razorx89
pydicom-seg

Python package for DICOM-SEG medical segmentation file reading and writing

6K 85 19
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