PyPI Stats
  • Insights
  • PyPI
  • GitHub
  • Search
  • Compare
  • Advisories
  • Ecosystem
  • About
Home

Methylation Python Packages

Python packages with the GitHub topic methylation. Sorted by relevance, with stars and monthly downloads.
FOXOBioScience
methylprep

Python-based preprocessing software for Illumina methylation arrays

4K 42 16
brj0
mepylome

Python toolkit for parsing, processing, and analysis of Illumina methylation array IDAT files

2K 10 1
NuttyLogic
bsbolt

Bisulfite Sequencing Processing Platform

2K 26 10
mcwdsi
bam2tensor

Convert methylation data to sparse objects for machine learning.

2K 1 0
lhqing
cemba-data

Mapping pipeline for snmC-seq based technologies.

1K 20 9
Paradoxdruid
pyllelic

pyllelic: a tool for detection of allele-specific methylation variation in bisulfite DNA sequencing.

941 6 2
lcamillo
cpgpt

CpGPT: a Foundation Model for DNA Methylation.

918 71 15
shitohana
bsxplorer

Analytical framework for BS-seq data comparison and visualization

859 8 0
FOXOBioScience
methylize

Python-based Illumina methylation array analysis software

769 16 7
liguowang
cpgtools

Python package to analyze DNA methylation data

767 45 13
nanoporetech
ont-remora

Methylation/modified base calling separated from basecalling.

745 186 27
shitohana
bismarkplot

Comprehensive tool for visualizing genome-wide cytosine data.

565 8 0
andrewdavidsmith
pyxfr

The Transferase Python API

519 4 0
KarrLab
bpforms

Toolkit for concretely describing non-canonical DNA, RNA, and proteins

513 7 2
cangermueller
deepcpg

Deep neural networks for predicting CpG methylation

468 152 71
VIBTOBIlab
methurator

Python package designed to estimate CpGs saturation for DNA methylation sequencing data.

451 0 1
anders-biostat
methscan

Python package with CLI for the analysis of single cell methylation data.

406 20 7
jmenendez98
hmmcdr

Accurately find CDRs and boundaries using a Hidden Markov Model

357 1 0
MuteJester
pyncbi

A Python API library for exploration and data retrieval from NCBI

328 3 3
bioinfomaticsCSU
deepsignal

Detecting methylation using signal-level features from Nanopore sequencing reads

314 118 23
ChaorongC
mesa-cfdna

Multimodal Epigenetic Sequencing Analysis (MESA) is a flexible and sensitive method of capturing and integrating multimodal epigenetic information of cfDNA using a single experimental assay.

302 2 0
projectoriented
methylink

CLI tool to link methylation tags between two files

232 1 0
PengNi
deepsignal-plant

Detecting methylation using signal-level features from Nanopore sequencing reads of plants

216 66 11
twlab
methylgrapher

WGBS data analysis for genome graph

133 15 1
    • Data from PyPI, GitHub, ClickHouse, and BigQuery