PyPI Stats

Microbiome Analysis Python Packages

Python packages with the GitHub topic microbiome-analysis. Sorted by relevance, with stars and monthly downloads.
amnona
dbbact-calour

dbBact (https://dbbact.org) interface for Calour (https://github.com/biocore/calour) for microbiome 16S analysis

505 1 0
JelenaBanjac
microbiome-toolbox

Early Life Microbiome Toolbox

458 12 2
GPZ-Bioinfo
tmap

topological data analysis of population-scale microbiomes

336 32 12
smdabdoub
qiime-tools

Tools for phylogenetic data analysis including visualization and cluster-computing support.

184 15 3
raeslab
dyspyosis

Calculate dysbiosis scores using Python

168 1 1
jordiabante
biodive

A reference-free statistical approach to diversity-generating & mobile genetic element discovery

135 6 0
garudlab
signature-snvs

Signature-SNVs a method for selecting signature SNVs from metagenomic data for input into FEAST for source tracking.

119 7 0
biocore
qiita-spots

Qiita - A multi-omics databasing effort

90 131 82
smdabdoub
phylotoast

Tools for phylogenetic data analysis including visualization and cluster-computing support.

70 15 3