Missing Data Python Packages

missingno

Missing data visualization module for Python.

pygrinder

PyGrinder: a Python toolkit for grinding data beans into the incomplete for real-world data simulation by introducing missing values with different missingness patterns, including MCAR (complete at random), MAR (at random), MNAR (not at random), sub sequence missing, and block missing

knnimpute

Python implementations of kNN imputation

snpio

API to read, write, and filter DNA sequence alignment files

impyute

Cross-sectional and time-series data imputation algorithms

ciss-vae

Python package for CISS-VAE.

mdatagen

mdatagen: A Python Library for the Generation of Artificial Missing Data

ppca-rs

Python+Rust implementation of the Probabilistic Principal Component Analysis model

ppca-py

[ppca-cpp] Probabilistic PCA (PPCA) with missing-data support — fast C++ core, clean Python API.

debias-infer

Python and R Packges for Efficient Inference on High-Dimensional Linear Models With Missing Outcomes

mlimputer

MLimputer: Missing Data Imputation Framework for Machine Learning

tck

Kernel similarity for classification and clustering of multi-variate time series with missing values.

rego

Automatic Time Series Forecasting and Missing Values Imputation

pandas-missing

A pandas extension to explore and handling missing values.

visualimiss

Small Python package to visualize missing data

scikit-na

Missing Data Analysis in Python

vizdataquality

Python package for visualizing data quality

askcarl

Gaussian mixture models with support for missing values and upper limits in some features.

pycorruptor

PyGrinder: a Python toolkit for grinding data beans into the incomplete for real-world data simulation by introducing missing values with different missingness patterns, including MCAR (complete at random), MAR (at random), MNAR (not at random), sub sequence missing, and block missing

imml

A python package for multi-modal learning with incomplete data

adenine

ADENINE: A Data ExploratioN PipelINE

imputena

Package that allows both automated and customized treatment of missing values in datasets using Python.

missingdata

missing data handing: visualize and impute

pristinizer

Pristinizer is a lightweight Python package for automatic data cleaning, exploratory data analysis (EDA), and missing data visualization for pandas DataFrames. It helps data scientists and ML engineers quickly clean and understand datasets with minimal effort.