Molecular Biology Python Packages

dna-features-viewer

:eye: Python library to plot DNA sequence features (e.g. from Genbank files)

35K 689 105

cryosparc-tools

Python library that enables scripting access to CryoSPARC, a cryo-EM software package.

22K 47 10

glycowork

Package for processing and analyzing glycans and their role in biology.

4K 91 18

multimolecule

Accelerate Molecular Biology Research with Machine Learning

4K 50 8

dnacauldron

Cloning simulation for DNA assembly (Golden Gate, Gibson...)

2K 66 10

pypath-omnipath

Python module for prior knowledge integration. Builds databases of signaling pathways, enzyme-substrate interactions, complexes, annotations and intercellular communication roles.

1K 162 48

streq

🧬 Python utilities for working with nucleotide sequence strings.

629 0 0

primer3plus

A easy-to-use Python API for Primer3 primer design.

613 16 7

dasi

A Python molecular biology CAD tool with a dead-simple user interface

610 13 1

dnadesign

A lua package for designing DNA.

580 38 1

bandwagon

🎺 Plot DNA digestion band patterns with Python

555 20 3

dna-features-viewer-lite

:eye: Python library to plot DNA sequence features (e.g. from Genbank files)

500 689 105

caravagene

🎨 Python library to plot multi-part genetic constructs

315 26 2

bioexplorer

The Blue Brain BioExplorer (BBBE) is a tool for data visualization experts and scientists to extract and analyze scientific data from visualization and interactive exploration

268 68 11

crazydoc

Read DNA sequences from colourful Microsoft Word documents

258 34 4

monte-barcode

🔴🟢🔵⚫️ Generating sets of random DNA sequences optimized for use in high-throughput sequencing.

161 0 0

ogilo-array

Automated construction of oligo library sequences for oligo array synthesis.

141 0 0

primerlab-genomic

A modular genomic toolkit focused on automated primer design, sequence validation, and workflow orchestration. Built for reliability, reproducibility, and scalable bioinformatics workflows.

141 0 0

pylabrat

A basic science lab framework aimed at reproducibility and lab management.

75 14 5

mediamaker

Media Maker Python SDK for Blue Brain BioExplorer

68 68 11

cisvar

Calculate both pre and post frequencies for ChIP or ATAC style data

41 6 0