Nanopore Python Packages

lib-pod5

Pod5: a high performance file format for nanopore reads.

pod5

Pod5: a high performance file format for nanopore reads.

medaka

Sequence correction provided by ONT Research

deepchopper-cli

Genomic Language Model Mitigates Chimera Artifacts in Nanopore Direct RNA Sequencing

sequali

Fast sequencing data quality metrics

pyspoa

Python bindings to spoa

dajin2

🔬 Genotyping tool for genome-edited samples using nanopore-targeted sequencing

medaka-cpu

Neural network sequence error correction.

deepchopper

Genomic Language Model Mitigates Chimera Artifacts in Nanopore Direct RNA Sequencing

recentrifuge

Recentrifuge: robust comparative analysis and contamination removal for metagenomics

pod5-format

Python bindings for the POD5 file format

isoquant

Transcript discovery and quantification with long RNA reads (Nanopores and PacBio)

sniffles

Structural variation caller using third generation sequencing

deeprm

Deep learning for RNA Modification

pycoqc

pycoQC computes metrics and generates Interactive QC plots from the sequencing summary report generated by Oxford Nanopore technologies basecaller (Albacore/Guppy)

nanocompore

RNA modifications detection from Nanopore dRNA-Seq data

ont-bonito

No description available

ampligone

A tool in order to accurately remove primer sequences from NGS reads in an amplicon experiment

ont-remora

Methylation/modified base calling separated from basecalling.

pynanolab

all in one GUI software for data analysis and visualization

tbpore

Mycobacterium tuberculosis genomic analysis from Nanopore sequencing data

dynamont

Segmentation/resquiggling tool for ONT signals.

poreplex

A versatile sequenced read processor for nanopore direct RNA sequencing

hairloom

A package to analyze split reads of long read data