Napari Plugin Python Packages

napari-spatialdata

Interactive visualization of spatial omics data

bfio

Interface to the Bioformats Java library

napari-matplotlib

Linking napari layers with Matplotlib plots

napari-video

Napari plugin for working with video files.

napari-omero

Browse your OMERO database from within napari.

napari-skimage-regionprops

Feature extraction for labeled objects in images using regionprops from scikit-image

napari-chat-assistant

Local AI and deterministic workbench for napari image-analysis workflows

brainglobe-napari-io

Read and write files from the BrainGlobe neuroanatomy suite

napari-segment-blobs-and-things-with-membranes

A plugin based on scikit-image for segmenting nuclei and cells based on fluorescent microscopy images with high intensity in nuclei and/or membranes.

napari-ome-zarr

A napari plugin for zarr backed OME-NGFF images

napari-time-slicer

A meta plugin for processing timelapse data timepoint by timepoint in napari

fishfeats

Napari plugin for spatial RNA quantification

napari-pyclesperanto-assistant

GPU-accelerated image processing in napari using OpenCL

napari-accelerated-pixel-and-object-classification

GPU-accelerated, OpenCL-based Random Forest Classifiers for pixel and labeled object classification in napari.

napari-clusters-plotter

A napari plugin for clustering objects according to their properties.

napari-tmidas

A plugin for batch processing of confocal and whole-slide microscopy images of biological tissues

napari-simpleitk-image-processing

Process images using SimpleITK in napari

mikro-napari

napari within the mikro environment

napari-process-points-and-surfaces

Process and analyze surfaces using open3d and vedo in napari

napari-yolov5

Plugin adapted from Ultralytics to bring YOLOv5 into Napari

cellfinder-napari

Efficient cell detection in large images using cellfinder in napari

careamics-napari

napari plugin for CAREamics

napari-allencell-segmenter

A plugin that enables 3D image segmentation provided by Allen Institute for Cell Science

devbio-napari

A bundle of napari plugins useful for 3D+t image processing and analysis for studying developmental biology.