Neurons Python Packages

efel

Electrophys Feature Extraction Library

skeletor

Extraction of 3D skeletons from meshes.

bluepyopt

Blue Brain Python Optimisation Library

neurom

Neuronal Morphology Analysis Tool

nest-simulator

NEST is a simulator for spiking neural network models that focuses on the dynamics, size and structure of neural systems rather than on the exact morphology of individual neurons.

navis

Python library for analysis of neuroanatomical data.

navis-fastcore

Reimplementation of navis functions in Rust.

ratinabox

A python package for simulating movement and spatial cell types (e.g. place cells, grid cells) in continuous environments.

pymoose-development-jayesh

C++ basecode and python scripting interface

flika

An interactive image processing program for biologists written in Python.

replay-classification

Non-parametric categorization of replay content from multiunit spiking activity

moose-core

C++ basecode and python scripting interface

brayns

Brayns Python API

supercluster

Supercluster Network is a special kind of Artifical Neural Network that can contain astronomic amount of neurons and learn in a sudden.

neurodatasets

The neurodatasets package provides a curated collection of neuroscience and brain-related datasets for data analysis, statistical modeling, and machine learning research. It includes datasets related to biomedical voice recordings, MRI brain imaging, Alzheimer's and Parkinson's disease biomarkers, epilepsy seizures, ADHD symptoms

neurox

A Python library that encapsulates various methods for neuron interpretation and analysis in Deep NLP models.

time-rescale

Tools for evaluating the goodness of fit of a point process model via the time rescaling theorem

cd-network

Analytical derivation of the stochastic output of coincidence detection (CD) neurons

plexus

a novel object-oriented approach to the artificial neural networks inspired by synaptic plasticity between biological neurons

swc2vtk

swc to vtk converter for visualization of neuron and neural circuit simulation in ParaView

nest-on-square-wheels

Python bindings for NEST

sparse-cubes

Marching cubes on sparse matrices