Neuroscience Python Packages

mne

MNE: Magnetoencephalography (MEG) and Electroencephalography (EEG) in Python

pynwb

A Python API for working with Neurodata stored in the NWB Format

mne-bids

MNE-BIDS is a Python package that allows you to read and write BIDS-compatible datasets with the help of MNE-Python.

antropy

AntroPy: entropy and complexity of (EEG) time-series in Python

efel

Electrophys Feature Extraction Library

edt

Euclidean distance & signed distance transform for multi-label 3D anisotropic images using marching parabolas.

braindecode

Deep learning software to decode EEG, ECG or MEG signals

neuron

NEURON Simulator

moabb

Mother of All BCI Benchmarks

snntorch

Deep and online learning with spiking neural networks in Python

brian2

Brian is a free, open source simulator for spiking neural networks.

pyprep

PyPREP: A Python implementation of the Preprocessing Pipeline (PREP) for EEG data

meegkit

🔧🧠 MEEGkit: MEG & EEG processing toolkit in Python

eegdash

EEG-DaSh: an open data, tool, and compute resource — a Python library and catalog for 700+ BIDS-first EEG, MEG, fNIRS, EMG, and iEEG datasets, ML-ready via PyTorch

spikeinterface

A Python-based module for creating flexible and robust spike sorting pipelines.

neuralset

Python suite for neuroscience research across all modalities.

neuraltrain

Python suite for neuroscience research across all modalities.

elephant

Elephant is the Electrophysiology Analysis Toolkit

psychopy

For running psychology and neuroscience experiments

datajoint

Relational data pipelines for the science lab

brainflow

BrainFlow is a library intended to obtain, parse and analyze EEG, EMG, ECG and other kinds of data from biosensors

neuron-nightly

NEURON Simulator

mne-icalabel

Automatic labeling of ICA components in Python.

modeci-mdf

This repository contains the source for the MDF specification and Python API