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Neuroscience Python Packages

Python packages with the GitHub topic neuroscience. Sorted by relevance, with stars and monthly downloads.
mne-tools
mne

MNE: Magnetoencephalography (MEG) and Electroencephalography (EEG) in Python

494K 3K 2K
NeurodataWithoutBorders
pynwb

A Python API for working with Neurodata stored in the NWB Format

308K 214 93
mne-tools
mne-bids

MNE-BIDS is a Python package that allows you to read and write BIDS-compatible datasets with the help of MNE-Python.

128K 168 105
raphaelvallat
antropy

AntroPy: entropy and complexity of (EEG) time-series in Python

123K 367 61
openbraininstitute
efel

Electrophys Feature Extraction Library

93K 9 0
seung-lab
edt

Euclidean distance & signed distance transform for multi-label 3D anisotropic images using marching parabolas.

73K 264 42
braindecode
braindecode

Deep learning software to decode EEG, ECG or MEG signals

66K 1K 261
neuronsimulator
neuron

NEURON Simulator

47K 516 142
NeuroTechX
moabb

Mother of All BCI Benchmarks

46K 982 241
jeshraghian
snntorch

Deep and online learning with spiking neural networks in Python

44K 2K 284
brian-team
brian2

Brian is a free, open source simulator for spiking neural networks.

43K 1K 284
sappelhoff
pyprep

PyPREP: A Python implementation of the Preprocessing Pipeline (PREP) for EEG data

42K 173 36
nbara
meegkit

🔧🧠 MEEGkit: MEG & EEG processing toolkit in Python

37K 225 55
eegdash
eegdash

EEG-DaSh: an open data, tool, and compute resource — a Python library and catalog for 700+ BIDS-first EEG, MEG, fNIRS, EMG, and iEEG datasets, ML-ready via PyTorch

36K 62 8
SpikeInterface
spikeinterface

A Python-based module for creating flexible and robust spike sorting pipelines.

35K 780 261
facebookresearch
neuralset

Python suite for neuroscience research across all modalities.

32K 103 25
facebookresearch
neuraltrain

Python suite for neuroscience research across all modalities.

32K 103 25
NeuralEnsemble
elephant

Elephant is the Electrophysiology Analysis Toolkit

24K 239 96
psychopy
psychopy

For running psychology and neuroscience experiments

22K 2K 976
datajoint
datajoint

Relational data pipelines for the science lab

22K 192 96
brainflow-dev
brainflow

BrainFlow is a library intended to obtain, parse and analyze EEG, EMG, ECG and other kinds of data from biosensors

22K 2K 391
neuronsimulator
neuron-nightly

NEURON Simulator

21K 516 142
mne-tools
mne-icalabel

Automatic labeling of ICA components in Python.

20K 119 19
ModECI
modeci-mdf

This repository contains the source for the MDF specification and Python API

18K 38 68
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