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Nifti Python Packages

Python packages with the GitHub topic nifti. Sorted by relevance, with stars and monthly downloads.
nipy
nibabel

Python package to access a cacophony of neuro-imaging file formats

1.8M 775 282
rordenlab
dcm2niix

dcm2nii DICOM to NIfTI converter: compiled versions available from NITRC

12K 1K 257
bhklab
med-imagetools

Transparent and reproducible medical image processing pipelines in Python.

6K 59 9
BrainLesion
auxiliary

helpful functions for handling biomedical-imaging data in DICOM or NIfTI format

3K 2 3
khanlab
zarrnii

Package for working with OME-Zarr and NIFTI images in a unified manner, with a focus on spatial transformations

3K 10 4
brainglobe
imio

Loading and saving of image data.

1K 10 2
niivue
niivue-streamlit

A Streamlit component for NiiVue neuroimaging viewer

759 446 114
tomaroberts
nii2dcm

nii2dcm: NIfTI to DICOM creation with Python

637 87 25
LREN-CHUV
data-tracking

This project contains scripts to extract metadata from DICOM files, NIFTI files and spreadsheets, and import them into a database.

484 4 2
vids-standard
vids-validator

Open standard for structuring, validating, and delivering annotated medical imaging datasets for AI/ML

460 0 0
vsoch
som

Stanford open modules for python

406 8 6
AdebayoBraimah
convert-source

Convert source DICOM, PAR REC or NIFTI image data to BIDS directory layout

383 1 0
deepc-health
nekton

A python package for DICOM to NifTi and NifTi to DICOM-SEG and GSPS conversion

312 12 2
alexlaurence
nii2png

🖼 A lightweight neuroimaging .nii to .png converter for Matlab and Python users

277 128 36
codingfisch
niftiai

Train neural nets on 3D images (e.g. MRIs) 🧠

275 3 0
pyvoxel
pyvoxel

Fast Pythonic data structures and tools for wrangling medical images.

265 28 4
lamyj
erwin

Toolbox to generate quantitative maps from MRI images

209 13 1
andrewrosss
nii-info

Display NIfTI image information in a tabular format

160 0 0
mcclaskey
batch-niistats

Calculate descriptive statistics for large numbers of 3D .nii files and return the output as a .csv file. Pure python code that works very quickly on all operating systems.

143 4 0
ofgulban
retinex-for-mri

Retinex algorithm for MRI data.

97 22 3
bioimagesuiteweb
biswebpython

This is the repository for the BioImage Suite Web Project

84 86 36
rordenlab
pydcm2niix

DCM2NIIX Python package

72 1K 257
khanlab
zarrnii-plugin-api

Package for working with OME-Zarr and NIFTI images in a unified manner, with a focus on spatial transformations

66 10 4
ofgulban
iphigen

A command-line program for n-dimensional image enhancement and color balancing.

37 22 3
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