Ontologies Python Packages

lamindb

Open-source data framework for biology. Context and memory for datasets and models at scale. Query, trace & validate with a lineage-native lakehouse that supports bio-formats, registries & ontologies. 🍊YC S22

101K 260 24

ontoportal-client

🎡 Unified access to OntoPortal instances like BioPortal, AgroPortal, and EcoPortal

38K 6 2

ols-client

🎡 Unified access to OLS instances like from the EBI and TIB

33K 13 2

lamindb-core

21K 260 24

naas-abi

AI Operating System - Build your own AI using ontologies as the unifying field connecting data, models, workflows, and systems.

17K 118 37

bel-resources

Utilities for BEL resource files.

14K 1 0

naas-abi-core

AI Operating System - Build your own AI using ontologies as the unifying field connecting data, models, workflows, and systems.

11K 118 37

linkml-owl

Extension of LinkML runtime for converting instances of LinkML classes to OWL (classes or instances)

10K 21 2

pyobo

📛 A Python package for using ontologies, terminologies, and biomedical nomenclatures

9K 77 17

naas-abi-marketplace

AI Operating System - Build your own AI using ontologies as the unifying field connecting data, models, workflows, and systems.

8K 118 37

ssslm

A simple standard for sharing literal mappings (SSSLM)

7K 1 0

emmontopy

Library for representing and working with ontologies in Python

6K 67 14

nxontology

NetworkX-based Python library for representing ontologies

6K 95 7

naas-abi-cli

AI Operating System - Build your own AI using ontologies as the unifying field connecting data, models, workflows, and systems.

6K 118 37

omnipy

Omnipy is a high level Python library for type-driven data wrangling and scalable workflow orchestration (under development)

3K 26 1

bio2bel

A Python framework for integrating biological databases and structured data sources in Biological Expression Language (BEL)

3K 21 5

ontolearner

OntoLearner: A Modular Python Library for Ontology Learning with LLMs https://pypi.org/project/OntoLearner/

2K 35 4

emmo

Library for representing and working with ontologies in Python

2K 68 14

deeponto

A package for ontology engineering with deep learning and language models.

1K 290 25

mowl-borg

mOWL: A machine learning library with ontologies

806 90 4

cello-classify

CellO: Gene expression-based hierarchical cell type classification using the Cell Ontology

677 68 14

interpretme

An interpretable machine learning pipeline over knowledge graphs

659 27 2

pyfactxx

Python bindings for upgraded FaCT++ description logic reasoner

601 31 4

sboannotator

SBOannotator: A Python tool for the automated assignment of Systems Biology Onotology terms

495 8 5