Open Science Python Packages

pyvista

3D plotting and mesh analysis through a streamlined interface for the Visualization Toolkit (VTK)

pynwb

A Python API for working with Neurodata stored in the NWB Format

geoh5py

Python API for geoh5, an open file format for geoscientific data.

itk-io

Insight Toolkit (ITK) -- Official Repository. ITK builds on a proven, spatially-oriented architecture for processing, segmentation, and registration of scientific images in two, three, or more dimensions.

itk-registration

Insight Toolkit (ITK) -- Official Repository. ITK builds on a proven, spatially-oriented architecture for processing, segmentation, and registration of scientific images in two, three, or more dimensions.

itk-filtering

Insight Toolkit (ITK) -- Official Repository. ITK builds on a proven, spatially-oriented architecture for processing, segmentation, and registration of scientific images in two, three, or more dimensions.

itk-core

Insight Toolkit (ITK) -- Official Repository. ITK builds on a proven, spatially-oriented architecture for processing, segmentation, and registration of scientific images in two, three, or more dimensions.

itk

Insight Toolkit (ITK) -- Official Repository. ITK builds on a proven, spatially-oriented architecture for processing, segmentation, and registration of scientific images in two, three, or more dimensions.

itk-numerics

Insight Toolkit (ITK) -- Official Repository. ITK builds on a proven, spatially-oriented architecture for processing, segmentation, and registration of scientific images in two, three, or more dimensions.

itk-segmentation

Insight Toolkit (ITK) -- Official Repository. ITK builds on a proven, spatially-oriented architecture for processing, segmentation, and registration of scientific images in two, three, or more dimensions.

earthaccess

Python Library for NASA Earthdata APIs

pycbc

Core package to analyze gravitational-wave data, find signals, and study their parameters. This package was used in the first direct detection of gravitational waves (GW150914), and is used in the ongoing analysis of LIGO/Virgo data.

itkwasm

High performance spatial analysis in a web browser and across programming languages and hardware architectures

osfclient

A python library and command-line client for file storage on OSF

itkwasm-downsample

High performance spatial analysis in a web browser and across programming languages and hardware architectures

itkwasm-downsample-wasi

High performance spatial analysis in a web browser and across programming languages and hardware architectures

itkwidgets

An elegant Python interface for visualization on the web platform to interactively generate insights into multidimensional images, point sets, and geometry.

simpeg

Simulation and Parameter Estimation in Geophysics - A python package for simulation and gradient based parameter estimation in the context of geophysical applications.

calkit-python

Research project management and automation.

avogadro

Avogadro libraries provide 3D rendering, visualization, analysis and data processing useful in computational chemistry, molecular modeling, bioinformatics, materials science, and related areas.

moltemplate

A general cross-platform text-based molecule builder for LAMMPS

datalayer-core

☰ 🧿 Datalayer Core - Python and TypeScript clients for Datalayer.

calk9

Research project management and automation.

itkwasm-image-io

High performance spatial analysis in a web browser and across programming languages and hardware architectures