Parameter Estimation Python Packages

casadi

CasADi is a symbolic framework for numeric optimization implementing automatic differentiation in forward and reverse modes on sparse matrix-valued computational graphs. It supports self-contained C-code generation and interfaces state-of-the-art codes such as SUNDIALS, IPOPT etc. It can be used from C++, Python or Matlab/Octave.

pints

Probabilistic Inference on Noisy Time Series

sbi

sbi is a Python package for simulation-based inference, designed to meet the needs of both researchers and practitioners. Whether you need fine-grained control or an easy-to-use interface, sbi has you covered.

petab

Python package for working with PEtab files

amici

High-performance sensitivity analysis for large ordinary differential equation models

casadi-gil-comp

CasADi is a symbolic framework for numeric optimization implementing automatic differentiation in forward and reverse modes on sparse matrix-valued computational graphs. It supports self-contained C-code generation and interfaces state-of-the-art codes such as SUNDIALS, IPOPT etc. It can be used from C++, Python or Matlab/Octave.

chekipeuq

Parameter estimation for complex physical problems often suffers from finding ‘solutions’ that are not physically realistic. The PEUQSE software provides tools for finding physically realistic parameter estimates, graphs of the parameter estimate positions within parameter space, and plots of the final simulation results.

pypesto

python Parameter EStimation TOolbox

pvfit5

Estimation of the five parameters of the PV single-diode model from datasheet data at STC

pycotools

A Python Toolbox for COPASI

psweep

Loop like a pro, make parameter studies fun.

biomass

A Python Framework for Modeling and Analysis of Signaling Systems

apexmf

python modules for APEX-MODFLOW-RT3D-Salt (AMRS) model parameter estimation and uncertainty analysis

symbolic-regression-toolkit

Toolkit for symbolic regression/equation discovery

swyft

A system for scientific simulation-based inference at scale.

peuqse

Parameter estimation for complex physical problems often suffers from finding ‘solutions’ that are not physically realistic. The PEUQSE software provides tools for finding physically realistic parameter estimates, graphs of the parameter estimate positions within parameter space, and plots of the final simulation results.

pycotools3

A Python toolbox for COPASI

madys

Manifold Age Determination for Young Stars

petab-gui

A graphical PEtab editor

welltestpy

welltestpy - package to handle well-based Field-campaigns.

lim-sample

Implementation of SAMPLE (Spectral Analysis for Modal Parameter Linear Estimate)

chi-drm

Chi is an open source Python package which is designed for PKPD modelling and model-informed precision dosing (MIPD).

tsblender

tsblender is a drop-in replacement (mostly) for TSPROC, rewritten in Python

modestpy

FMI-compliant model identification package