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Phylogenetic Trees Python Packages

Python packages with the GitHub topic phylogenetic-trees. Sorted by relevance, with stars and monthly downloads.
cogent3
cogent3

Comparative Genomics Toolkit 3

25K 134 67
moshi4
pycirclize

Circular visualization in Python (Circos Plot, Chord Diagram, Radar Chart)

23K 1K 60
albertyw
itolapi

Python API for the Interactive Tree of Life (iTOL)

5K 37 11
biobakery
phylophlan

Precise phylogenetic analysis of microbial isolates and genomes from metagenomes

3K 166 36
ponnhide
python-circos

python Circos

1K 372 66
AndreaRubbi
pear-ebi

Calculates distances of trees in large collections. Embeds distances and plot the embeddings with dynamic interfaces.

1K 6 3
david-schaller
asymmetree

Simulator for species and gene trees with asymmetric evolution rates

1K 7 2
LegumeFederation
lorax

a web server that "speaks for the (phylogenetic) trees"

1K 1 2
DeadlineWasYesterday
bionick

Software for manipulating Newick strings and adding phylogenies to Matplotlib visuals.

857 0 0
davised
automlsa2

Automated Multi-Locus Sequence Analysis phylogenetic tree construction software

751 5 0
lkndl
ab12phylo

Integrated pipeline for ML phylogenetic inference from ABI trace and FASTA data

700 3 3
rmcar17
sc-supertree

A supertree method for rooted source trees

501 12 1
moshi4
cafeplotter

A tool for plotting CAFE5 gene family expansion/contraction result

362 36 3
shanedrabing
taxopedia

Taxonomic trees (cladograms) from Wikipedia-scraped data.

319 10 1
mycolab
mycolab

Command line tools for MycoLab

286 5 0
moshi4
phytreeviz

Simple phylogenetic tree visualization python package for phylogenetic analysis

240 66 1
iliapopov17
phyloki

Annotate phylogenetic trees like never before

128 0 0
biobakery
graphlan

High-quality circular representations of taxonomic and phylogenetic trees

110 108 30
Robaina
jplaceparser

A python parser for jplace (evolutionary placement) files

53 3 0
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